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F13A1 (coagulation factor XIII A chain)

Identity

Other namesF13A
HGNC (Hugo) F13A1
LocusID (NCBI) 2162
Atlas_Id 47551
Location 6p25.1
Location_base_pair Starts at 6144311 and ends at 6320924 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CDAN1 (15q15.2) / F13A1 (6p25.1)F13A1 (6p25.1) / F13A1 (6p25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)F13A1   3531
Cards
Entrez_Gene (NCBI)F13A1  2162  coagulation factor XIII A chain
AliasesF13A
GeneCards (Weizmann)F13A1
Ensembl hg19 (Hinxton)ENSG00000124491 [Gene_View]  chr6:6144311-6320924 [Contig_View]  F13A1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000124491 [Gene_View]  chr6:6144311-6320924 [Contig_View]  F13A1 [Vega]
ICGC DataPortalENSG00000124491
TCGA cBioPortalF13A1
AceView (NCBI)F13A1
Genatlas (Paris)F13A1
WikiGenes2162
SOURCE (Princeton)F13A1
Genomic and cartography
GoldenPath hg19 (UCSC)F13A1  -     chr6:6144311-6320924 -  6p25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)F13A1  -     6p25.1   [Description]    (hg38-Dec_2013)
EnsemblF13A1 - 6p25.1 [CytoView hg19]  F13A1 - 6p25.1 [CytoView hg38]
Mapping of homologs : NCBIF13A1 [Mapview hg19]  F13A1 [Mapview hg38]
OMIM134570   188050   608446   613225   
Gene and transcription
Genbank (Entrez)AB208852 AK130666 AK304335 AK312735 BC027963
RefSeq transcript (Entrez)NM_000129
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_008107 NT_007592 NW_004929326
Consensus coding sequences : CCDS (NCBI)F13A1
Cluster EST : UnigeneHs.335513 [ NCBI ]
CGAP (NCI)Hs.335513
Alternative Splicing GalleryENSG00000124491
Gene ExpressionF13A1 [ NCBI-GEO ]   F13A1 [ EBI - ARRAY_EXPRESS ]   F13A1 [ SEEK ]   F13A1 [ MEM ]
Gene Expression Viewer (FireBrowse)F13A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2162
GTEX Portal (Tissue expression)F13A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP00488 (Uniprot)
NextProtP00488  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP00488
Splice isoforms : SwissVarP00488 (Swissvar)
Catalytic activity : Enzyme2.3.2.13 [ Enzyme-Expasy ]   2.3.2.132.3.2.13 [ IntEnz-EBI ]   2.3.2.13 [ BRENDA ]   2.3.2.13 [ KEGG ]   
PhosPhoSitePlusP00488
Domaine pattern : Prosite (Expaxy)TRANSGLUTAMINASES (PS00547)   
Domains : Interpro (EBI)Gln_gamma-glutamylTfrase_euk    Ig-like_fold    Ig_E-set    Transglutaminase-like    Transglutaminase_C    Transglutaminase_CS    Transglutaminase_N   
Domain families : Pfam (Sanger)Transglut_C (PF00927)    Transglut_core (PF01841)    Transglut_N (PF00868)   
Domain families : Pfam (NCBI)pfam00927    pfam01841    pfam00868   
Domain families : Smart (EMBL)TGc (SM00460)  
DMDM Disease mutations2162
Blocks (Seattle)F13A1
PDB (SRS)1EVU    1EX0    1F13    1FIE    1GGT    1GGU    1GGY    1QRK    4KTY   
PDB (PDBSum)1EVU    1EX0    1F13    1FIE    1GGT    1GGU    1GGY    1QRK    4KTY   
PDB (IMB)1EVU    1EX0    1F13    1FIE    1GGT    1GGU    1GGY    1QRK    4KTY   
PDB (RSDB)1EVU    1EX0    1F13    1FIE    1GGT    1GGU    1GGY    1QRK    4KTY   
Structural Biology KnowledgeBase1EVU    1EX0    1F13    1FIE    1GGT    1GGU    1GGY    1QRK    4KTY   
SCOP (Structural Classification of Proteins)1EVU    1EX0    1F13    1FIE    1GGT    1GGU    1GGY    1QRK    4KTY   
CATH (Classification of proteins structures)1EVU    1EX0    1F13    1FIE    1GGT    1GGU    1GGY    1QRK    4KTY   
SuperfamilyP00488
Human Protein AtlasENSG00000124491
Peptide AtlasP00488
HPRD00604
IPIIPI00297550   IPI00513858   IPI00642188   IPI00855773   IPI00855854   
Protein Interaction databases
DIP (DOE-UCLA)P00488
IntAct (EBI)P00488
FunCoupENSG00000124491
BioGRIDF13A1
STRING (EMBL)F13A1
ZODIACF13A1
Ontologies - Pathways
QuickGOP00488
Ontology : AmiGOplatelet degranulation  protein-glutamine gamma-glutamyltransferase activity  extracellular region  blood coagulation  peptide cross-linking  platelet alpha granule lumen  metal ion binding  blood microparticle  
Ontology : EGO-EBIplatelet degranulation  protein-glutamine gamma-glutamyltransferase activity  extracellular region  blood coagulation  peptide cross-linking  platelet alpha granule lumen  metal ion binding  blood microparticle  
Pathways : BIOCARTAFibrinolysis Pathway [Genes]   
Pathways : KEGGComplement and coagulation cascades   
NDEx Network
Atlas of Cancer Signalling NetworkF13A1
Wikipedia pathwaysF13A1
Orthology - Evolution
OrthoDB2162
GeneTree (enSembl)ENSG00000124491
Phylogenetic Trees/Animal Genes : TreeFamF13A1
Homologs : HomoloGeneF13A1
Homology/Alignments : Family Browser (UCSC)F13A1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerF13A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)F13A1
dbVarF13A1
ClinVarF13A1
1000_GenomesF13A1 
Exome Variant ServerF13A1
ExAC (Exome Aggregation Consortium)F13A1 (select the gene name)
Genetic variants : HAPMAP2162
Genomic Variants (DGV)F13A1 [DGVbeta]
Mutations
ICGC Data PortalF13A1 
TCGA Data PortalF13A1 
Broad Tumor PortalF13A1
OASIS PortalF13A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICF13A1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch F13A1
DgiDB (Drug Gene Interaction Database)F13A1
DoCM (Curated mutations)F13A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)F13A1 (select a term)
intoGenF13A1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)6:6144311-6320924  ENSG00000124491
CONAN: Copy Number AnalysisF13A1 
Mutations and Diseases : HGMDF13A1
OMIM134570    188050    608446    613225   
MedgenF13A1
Genetic Testing Registry F13A1
NextProtP00488 [Medical]
TSGene2162
GENETestsF13A1
Huge Navigator F13A1 [HugePedia]
snp3D : Map Gene to Disease2162
BioCentury BCIQF13A1
ClinGenF13A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2162
Chemical/Pharm GKB GenePA162
Clinical trialF13A1
Miscellaneous
canSAR (ICR)F13A1 (select the gene name)
Probes
Litterature
PubMed294 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineF13A1
EVEXF13A1
GoPubMedF13A1
iHOPF13A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 11:02:05 CEST 2016

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