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F13B (coagulation factor XIII B chain)

Identity

Alias_namescoagulation factor XIII, B polypeptide
Alias_symbol (synonym)FXIIIB
Other alias
HGNC (Hugo) F13B
LocusID (NCBI) 2165
Atlas_Id 62961
Location 1q31.3  [Link to chromosome band 1q31]
Location_base_pair Starts at 197039191 and ends at 197067267 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KIF21B (1q32.1) / F13B (1q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)F13B   3534
LRG (Locus Reference Genomic)LRG_550
Cards
Entrez_Gene (NCBI)F13B  2165  coagulation factor XIII B chain
AliasesFXIIIB
GeneCards (Weizmann)F13B
Ensembl hg19 (Hinxton)ENSG00000143278 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143278 [Gene_View]  chr1:197039191-197067267 [Contig_View]  F13B [Vega]
ICGC DataPortalENSG00000143278
TCGA cBioPortalF13B
AceView (NCBI)F13B
Genatlas (Paris)F13B
WikiGenes2165
SOURCE (Princeton)F13B
Genetics Home Reference (NIH)F13B
Genomic and cartography
GoldenPath hg38 (UCSC)F13B  -     chr1:197039191-197067267 -  1q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)F13B  -     1q31.3   [Description]    (hg19-Feb_2009)
EnsemblF13B - 1q31.3 [CytoView hg19]  F13B - 1q31.3 [CytoView hg38]
Mapping of homologs : NCBIF13B [Mapview hg19]  F13B [Mapview hg38]
OMIM134580   613235   
Gene and transcription
Genbank (Entrez)AK290560 BC148333 BX510295 CB157213 M14057
RefSeq transcript (Entrez)NM_001994
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)F13B
Cluster EST : UnigeneHs.435782 [ NCBI ]
CGAP (NCI)Hs.435782
Alternative Splicing GalleryENSG00000143278
Gene ExpressionF13B [ NCBI-GEO ]   F13B [ EBI - ARRAY_EXPRESS ]   F13B [ SEEK ]   F13B [ MEM ]
Gene Expression Viewer (FireBrowse)F13B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2165
GTEX Portal (Tissue expression)F13B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05160   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP05160  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP05160
Splice isoforms : SwissVarP05160
PhosPhoSitePlusP05160
Domaine pattern : Prosite (Expaxy)SUSHI (PS50923)   
Domains : Interpro (EBI)Sushi_SCR_CCP_dom   
Domain families : Pfam (Sanger)Sushi (PF00084)   
Domain families : Pfam (NCBI)pfam00084   
Domain families : Smart (EMBL)CCP (SM00032)  
Conserved Domain (NCBI)F13B
DMDM Disease mutations2165
Blocks (Seattle)F13B
SuperfamilyP05160
Human Protein AtlasENSG00000143278
Peptide AtlasP05160
HPRD00605
IPIIPI00007240   
Protein Interaction databases
DIP (DOE-UCLA)P05160
IntAct (EBI)P05160
FunCoupENSG00000143278
BioGRIDF13B
STRING (EMBL)F13B
ZODIACF13B
Ontologies - Pathways
QuickGOP05160
Ontology : AmiGOextracellular region  extracellular region  blood coagulation  
Ontology : EGO-EBIextracellular region  extracellular region  blood coagulation  
Pathways : KEGGComplement and coagulation cascades   
NDEx NetworkF13B
Atlas of Cancer Signalling NetworkF13B
Wikipedia pathwaysF13B
Orthology - Evolution
OrthoDB2165
GeneTree (enSembl)ENSG00000143278
Phylogenetic Trees/Animal Genes : TreeFamF13B
HOVERGENP05160
HOGENOMP05160
Homologs : HomoloGeneF13B
Homology/Alignments : Family Browser (UCSC)F13B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerF13B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)F13B
dbVarF13B
ClinVarF13B
1000_GenomesF13B 
Exome Variant ServerF13B
ExAC (Exome Aggregation Consortium)F13B (select the gene name)
Genetic variants : HAPMAP2165
Genomic Variants (DGV)F13B [DGVbeta]
DECIPHERF13B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisF13B 
Mutations
ICGC Data PortalF13B 
TCGA Data PortalF13B 
Broad Tumor PortalF13B
OASIS PortalF13B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICF13B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDF13B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch F13B
DgiDB (Drug Gene Interaction Database)F13B
DoCM (Curated mutations)F13B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)F13B (select a term)
intoGenF13B
Cancer3DF13B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM134580    613235   
Orphanet3336   
MedgenF13B
Genetic Testing Registry F13B
NextProtP05160 [Medical]
TSGene2165
GENETestsF13B
Target ValidationF13B
Huge Navigator F13B [HugePedia]
snp3D : Map Gene to Disease2165
BioCentury BCIQF13B
ClinGenF13B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2165
Chemical/Pharm GKB GenePA27944
Clinical trialF13B
Miscellaneous
canSAR (ICR)F13B (select the gene name)
Probes
Litterature
PubMed70 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineF13B
EVEXF13B
GoPubMedF13B
iHOPF13B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:47:36 CEST 2017

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