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F2 (coagulation factor II, thrombin)

Identity

Alias_namescoagulation factor II (thrombin)
Other aliasPT
RPRGL2
THPH1
HGNC (Hugo) F2
LocusID (NCBI) 2147
Atlas_Id 40520
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 46719166 and ends at 46739508 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C11orf49 (11p11.2) / F2 (11p11.2)LPP (3q28) / F2 (11p11.2)C11orf49 11p11.2 / F2 11p11.2
LPP 3q28 / F2 11p11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]

Solid Tumors TT_t0311q28p11ID105607 TT_t1111p11p11ID100460


External links

Nomenclature
HGNC (Hugo)F2   3535
LRG (Locus Reference Genomic)LRG_551
Cards
Entrez_Gene (NCBI)F2  2147  coagulation factor II, thrombin
AliasesPT; RPRGL2; THPH1
GeneCards (Weizmann)F2
Ensembl hg19 (Hinxton)ENSG00000180210 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180210 [Gene_View]  ENSG00000180210 [Sequence]  chr11:46719166-46739508 [Contig_View]  F2 [Vega]
ICGC DataPortalENSG00000180210
TCGA cBioPortalF2
AceView (NCBI)F2
Genatlas (Paris)F2
WikiGenes2147
SOURCE (Princeton)F2
Genetics Home Reference (NIH)F2
Genomic and cartography
GoldenPath hg38 (UCSC)F2  -     chr11:46719166-46739508 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)F2  -     11p11.2   [Description]    (hg19-Feb_2009)
GoldenPathF2 - 11p11.2 [CytoView hg19]  F2 - 11p11.2 [CytoView hg38]
ImmunoBaseENSG00000180210
Mapping of homologs : NCBIF2 [Mapview hg19]  F2 [Mapview hg38]
OMIM176930   188050   601367   613679   614390   
Gene and transcription
Genbank (Entrez)AJ972449 AK222775 AK222777 AK293326 AK303747
RefSeq transcript (Entrez)NM_000506 NM_001311257
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)F2
Alternative Splicing GalleryENSG00000180210
Gene ExpressionF2 [ NCBI-GEO ]   F2 [ EBI - ARRAY_EXPRESS ]   F2 [ SEEK ]   F2 [ MEM ]
Gene Expression Viewer (FireBrowse)F2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)2147
GTEX Portal (Tissue expression)F2
Human Protein AtlasENSG00000180210-F2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)F2
DMDM Disease mutations2147
Blocks (Seattle)F2
Human Protein Atlas [tissue]ENSG00000180210-F2 [tissue]
HPRD01488
IPIIPI00019568   IPI00816612   IPI00877967   IPI00975497   
Protein Interaction databases
FunCoupENSG00000180210
BioGRIDF2
STRING (EMBL)F2
ZODIACF2
Ontologies - Pathways
Huge Navigator F2 [HugePedia]
snp3D : Map Gene to Disease2147
BioCentury BCIQF2
ClinGenF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2147
Chemical/Pharm GKB GenePA157
Clinical trialF2
Miscellaneous
canSAR (ICR)F2 (select the gene name)
DataMed IndexF2
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineF2
EVEXF2
GoPubMedF2
iHOPF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 16:43:26 CET 2020

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