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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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F5 (coagulation factor V (proaccelerin, labile factor))

Identity

Other namesFVL
PCCF
RPRGL1
THPH2
HGNC (Hugo) F5
LocusID (NCBI) 2153
Location 1q24.2
Location_base_pair Starts at 169481192 and ends at 169555769 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)F5   3542
Cards
Entrez_Gene (NCBI)F5  2153  coagulation factor V (proaccelerin, labile factor)
GeneCards (Weizmann)F5
Ensembl hg19 (Hinxton) [Gene_View]  chr1:169481192-169555769 [Contig_View]  F5 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:169481192-169555769 [Contig_View]  F5 [Vega]
cBioPortalF5
AceView (NCBI)F5
Genatlas (Paris)F5
WikiGenes2153
SOURCE (Princeton)F5
Genomic and cartography
GoldenPath hg19 (UCSC)F5  -     chr1:169481192-169555769 -  1q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)F5  -     1q24.2   [Description]    (hg38-Dec_2013)
EnsemblF5 - 1q24.2 [CytoView hg19]  F5 - 1q24.2 [CytoView hg38]
Mapping of homologs : NCBIF5 [Mapview hg19]  F5 [Mapview hg38]
OMIM188055   227400   600880   601367   612309   614389   
Gene and transcription
Genbank (Entrez)AJ297254 AJ297255 AK226079 AK291613 AK300469
RefSeq transcript (Entrez)NM_000130
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_011806 NT_004487 NW_001838533 NW_004929293
Consensus coding sequences : CCDS (NCBI)F5
Cluster EST : UnigeneHs.30054 [ NCBI ]
CGAP (NCI)Hs.30054
Alternative Splicing : Fast-db (Paris)GSHG0002724
Gene ExpressionF5 [ NCBI-GEO ]     F5 [ SEEK ]   F5 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP12259 (Uniprot)
NextProtP12259  [Medical]
With graphics : InterProP12259
Splice isoforms : SwissVarP12259 (Swissvar)
Domaine pattern : Prosite (Expaxy)FA58C_1 (PS01285)    FA58C_2 (PS01286)    FA58C_3 (PS50022)    MULTICOPPER_OXIDASE1 (PS00079)   
Domains : Interpro (EBI)Coagulation_fac_5/8-C_type_dom    Cu-oxidase_3    Cu_oxidase_Cu_BS    Cupredoxin    Factor_5/8    Galactose-bd-like   
Related proteins : CluSTrP12259
Domain families : Pfam (Sanger)Cu-oxidase_3 (PF07732)    F5_F8_type_C (PF00754)   
Domain families : Pfam (NCBI)pfam07732    pfam00754   
Domain families : Smart (EMBL)FA58C (SM00231)  
DMDM Disease mutations2153
Blocks (Seattle)P12259
PDB (SRS)1CZS    1CZT    1CZV    1FV4    1Y61    3P6Z    3P70    3S9C   
PDB (PDBSum)1CZS    1CZT    1CZV    1FV4    1Y61    3P6Z    3P70    3S9C   
PDB (IMB)1CZS    1CZT    1CZV    1FV4    1Y61    3P6Z    3P70    3S9C   
PDB (RSDB)1CZS    1CZT    1CZV    1FV4    1Y61    3P6Z    3P70    3S9C   
Peptide AtlasP12259
HPRD01964
IPIIPI00478809   IPI01015326   IPI00953390   IPI00815941   IPI00022937   
Protein Interaction databases
DIP (DOE-UCLA)P12259
IntAct (EBI)P12259
BioGRIDF5
IntegromeDBF5
STRING (EMBL)F5
Ontologies - Pathways
QuickGOP12259
Ontology : AmiGOplatelet degranulation  serine-type endopeptidase activity  copper ion binding  protein binding  extracellular region  extracellular region  extracellular space  plasma membrane  proteolysis  cell adhesion  blood coagulation  blood circulation  membrane  platelet activation  platelet alpha granule lumen  
Ontology : EGO-EBIplatelet degranulation  serine-type endopeptidase activity  copper ion binding  protein binding  extracellular region  extracellular region  extracellular space  plasma membrane  proteolysis  cell adhesion  blood coagulation  blood circulation  membrane  platelet activation  platelet alpha granule lumen  
Pathways : BIOCARTAIntrinsic Prothrombin Activation Pathway [Genes]    Extrinsic Prothrombin Activation Pathway [Genes]   
Pathways : KEGGComplement and coagulation cascades   
Protein Interaction DatabaseF5
DoCM (Curated mutations)F5
Wikipedia pathwaysF5
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerF5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)F5
dbVarF5
ClinVarF5
1000_GenomesF5 
Exome Variant ServerF5
SNP (GeneSNP Utah)F5
SNP : HGBaseF5
Genetic variants : HAPMAPF5
Genomic Variants (DGV)F5 [DGVbeta]
Mutations
Somatic Mutations in Cancer : COSMICF5 
CONAN: Copy Number AnalysisF5 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:169481192-169555769
Mutations and Diseases : HGMDF5
OMIM188055    227400    600880    601367    612309    614389   
MedgenF5
NextProtP12259 [Medical]
GENETestsF5
Disease Genetic AssociationF5
Huge Navigator F5 [HugePedia]  F5 [HugeCancerGEM]
snp3D : Map Gene to Disease2153
DGIdb (Drug Gene Interaction db)F5
General knowledge
Homologs : HomoloGeneF5
Homology/Alignments : Family Browser (UCSC)F5
Phylogenetic Trees/Animal Genes : TreeFamF5
Chemical/Protein Interactions : CTD2153
Chemical/Pharm GKB GenePA159
Clinical trialF5
Other databases
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
CoreMineF5
GoPubMedF5
iHOPF5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 15:41:40 CET 2015

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