Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

F7 (coagulation factor VII)

Identity

Other namesSPCA
HGNC (Hugo) F7
LocusID (NCBI) 2155
Atlas_Id 46526
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 113760102 and ends at 113774995 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)F7   3544
Cards
Entrez_Gene (NCBI)F7  2155  coagulation factor VII
AliasesSPCA
GeneCards (Weizmann)F7
Ensembl hg19 (Hinxton)ENSG00000057593 [Gene_View]  chr13:113760102-113774995 [Contig_View]  F7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000057593 [Gene_View]  chr13:113760102-113774995 [Contig_View]  F7 [Vega]
ICGC DataPortalENSG00000057593
TCGA cBioPortalF7
AceView (NCBI)F7
Genatlas (Paris)F7
WikiGenes2155
SOURCE (Princeton)F7
Genomic and cartography
GoldenPath hg19 (UCSC)F7  -     chr13:113760102-113774995 +  13q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)F7  -     13q34   [Description]    (hg38-Dec_2013)
EnsemblF7 - 13q34 [CytoView hg19]  F7 - 13q34 [CytoView hg38]
Mapping of homologs : NCBIF7 [Mapview hg19]  F7 [Mapview hg38]
OMIM227500   608446   613878   
Gene and transcription
Genbank (Entrez)AI076552 AK298404 AK310779 AK311565 AK311682
RefSeq transcript (Entrez)NM_000131 NM_001267554 NM_019616
RefSeq genomic (Entrez)NC_000013 NC_018924 NG_009262 NT_027140 NW_004929390
Consensus coding sequences : CCDS (NCBI)F7
Cluster EST : UnigeneHs.36989 [ NCBI ]
CGAP (NCI)Hs.36989
Alternative Splicing GalleryENSG00000057593
Gene ExpressionF7 [ NCBI-GEO ]   F7 [ EBI - ARRAY_EXPRESS ]   F7 [ SEEK ]   F7 [ MEM ]
Gene Expression Viewer (FireBrowse)F7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2155
GTEX Portal (Tissue expression)F7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP08709 (Uniprot)
NextProtP08709  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP08709
Splice isoforms : SwissVarP08709 (Swissvar)
Catalytic activity : Enzyme3.4.21.21 [ Enzyme-Expasy ]   3.4.21.213.4.21.21 [ IntEnz-EBI ]   3.4.21.21 [ BRENDA ]   3.4.21.21 [ KEGG ]   
PhosPhoSitePlusP08709
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)    GLA_1 (PS00011)    GLA_2 (PS50998)    TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)Coagulation_fac_subgr_Gla_dom    EGF-like_Ca-bd_dom    EGF-like_CS    EGF-like_dom    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    GLA_domain    Pept_S1A_FX    Peptidase_S1_PA    Peptidase_S1A    Trypsin_dom    TRYPSIN_HIS    TRYPSIN_SER   
Domain families : Pfam (Sanger)EGF (PF00008)    Gla (PF00594)    Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00008    pfam00594    pfam00089   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_CA (SM00179)  GLA (SM00069)  Tryp_SPc (SM00020)  
DMDM Disease mutations2155
Blocks (Seattle)F7
PDB (SRS)1BF9    1CVW    1DAN    1DVA    1F7E    1F7M    1FAK    1FF7    1FFM    1J9C    1JBU    1KLI    1KLJ    1NL8    1O5D    1QFK    1W0Y    1W2K    1W7X    1W8B    1WQV    1WSS    1WTG    1WUN    1WV7    1YGC    1Z6J    2A2Q    2AEI    2AER    2B7D    2B8O    2BZ6    2C4F    2EC9    2F9B    2FIR    2FLB    2FLR    2PUQ    2ZP0    2ZWL    2ZZU    3ELA    3TH2    3TH3    3TH4    4IBL    4ISH    4ISI    4JYU    4JYV    4JZD    4JZE    4JZF    4NA9    4NG9    4NGA    4X8S    4X8T    4X8U    4X8V    4YLQ    4YT6    4YT7    4Z6A    4ZMA    4ZXX    4ZXY   
PDB (PDBSum)1BF9    1CVW    1DAN    1DVA    1F7E    1F7M    1FAK    1FF7    1FFM    1J9C    1JBU    1KLI    1KLJ    1NL8    1O5D    1QFK    1W0Y    1W2K    1W7X    1W8B    1WQV    1WSS    1WTG    1WUN    1WV7    1YGC    1Z6J    2A2Q    2AEI    2AER    2B7D    2B8O    2BZ6    2C4F    2EC9    2F9B    2FIR    2FLB    2FLR    2PUQ    2ZP0    2ZWL    2ZZU    3ELA    3TH2    3TH3    3TH4    4IBL    4ISH    4ISI    4JYU    4JYV    4JZD    4JZE    4JZF    4NA9    4NG9    4NGA    4X8S    4X8T    4X8U    4X8V    4YLQ    4YT6    4YT7    4Z6A    4ZMA    4ZXX    4ZXY   
PDB (IMB)1BF9    1CVW    1DAN    1DVA    1F7E    1F7M    1FAK    1FF7    1FFM    1J9C    1JBU    1KLI    1KLJ    1NL8    1O5D    1QFK    1W0Y    1W2K    1W7X    1W8B    1WQV    1WSS    1WTG    1WUN    1WV7    1YGC    1Z6J    2A2Q    2AEI    2AER    2B7D    2B8O    2BZ6    2C4F    2EC9    2F9B    2FIR    2FLB    2FLR    2PUQ    2ZP0    2ZWL    2ZZU    3ELA    3TH2    3TH3    3TH4    4IBL    4ISH    4ISI    4JYU    4JYV    4JZD    4JZE    4JZF    4NA9    4NG9    4NGA    4X8S    4X8T    4X8U    4X8V    4YLQ    4YT6    4YT7    4Z6A    4ZMA    4ZXX    4ZXY   
PDB (RSDB)1BF9    1CVW    1DAN    1DVA    1F7E    1F7M    1FAK    1FF7    1FFM    1J9C    1JBU    1KLI    1KLJ    1NL8    1O5D    1QFK    1W0Y    1W2K    1W7X    1W8B    1WQV    1WSS    1WTG    1WUN    1WV7    1YGC    1Z6J    2A2Q    2AEI    2AER    2B7D    2B8O    2BZ6    2C4F    2EC9    2F9B    2FIR    2FLB    2FLR    2PUQ    2ZP0    2ZWL    2ZZU    3ELA    3TH2    3TH3    3TH4    4IBL    4ISH    4ISI    4JYU    4JYV    4JZD    4JZE    4JZF    4NA9    4NG9    4NGA    4X8S    4X8T    4X8U    4X8V    4YLQ    4YT6    4YT7    4Z6A    4ZMA    4ZXX    4ZXY   
Structural Biology KnowledgeBase1BF9    1CVW    1DAN    1DVA    1F7E    1F7M    1FAK    1FF7    1FFM    1J9C    1JBU    1KLI    1KLJ    1NL8    1O5D    1QFK    1W0Y    1W2K    1W7X    1W8B    1WQV    1WSS    1WTG    1WUN    1WV7    1YGC    1Z6J    2A2Q    2AEI    2AER    2B7D    2B8O    2BZ6    2C4F    2EC9    2F9B    2FIR    2FLB    2FLR    2PUQ    2ZP0    2ZWL    2ZZU    3ELA    3TH2    3TH3    3TH4    4IBL    4ISH    4ISI    4JYU    4JYV    4JZD    4JZE    4JZF    4NA9    4NG9    4NGA    4X8S    4X8T    4X8U    4X8V    4YLQ    4YT6    4YT7    4Z6A    4ZMA    4ZXX    4ZXY   
SCOP (Structural Classification of Proteins)1BF9    1CVW    1DAN    1DVA    1F7E    1F7M    1FAK    1FF7    1FFM    1J9C    1JBU    1KLI    1KLJ    1NL8    1O5D    1QFK    1W0Y    1W2K    1W7X    1W8B    1WQV    1WSS    1WTG    1WUN    1WV7    1YGC    1Z6J    2A2Q    2AEI    2AER    2B7D    2B8O    2BZ6    2C4F    2EC9    2F9B    2FIR    2FLB    2FLR    2PUQ    2ZP0    2ZWL    2ZZU    3ELA    3TH2    3TH3    3TH4    4IBL    4ISH    4ISI    4JYU    4JYV    4JZD    4JZE    4JZF    4NA9    4NG9    4NGA    4X8S    4X8T    4X8U    4X8V    4YLQ    4YT6    4YT7    4Z6A    4ZMA    4ZXX    4ZXY   
CATH (Classification of proteins structures)1BF9    1CVW    1DAN    1DVA    1F7E    1F7M    1FAK    1FF7    1FFM    1J9C    1JBU    1KLI    1KLJ    1NL8    1O5D    1QFK    1W0Y    1W2K    1W7X    1W8B    1WQV    1WSS    1WTG    1WUN    1WV7    1YGC    1Z6J    2A2Q    2AEI    2AER    2B7D    2B8O    2BZ6    2C4F    2EC9    2F9B    2FIR    2FLB    2FLR    2PUQ    2ZP0    2ZWL    2ZZU    3ELA    3TH2    3TH3    3TH4    4IBL    4ISH    4ISI    4JYU    4JYV    4JZD    4JZE    4JZF    4NA9    4NG9    4NGA    4X8S    4X8T    4X8U    4X8V    4YLQ    4YT6    4YT7    4Z6A    4ZMA    4ZXX    4ZXY   
SuperfamilyP08709
Human Protein AtlasENSG00000057593
Peptide AtlasP08709
HPRD01965
IPIIPI00329555   IPI00798065   IPI00893182   
Protein Interaction databases
DIP (DOE-UCLA)P08709
IntAct (EBI)P08709
FunCoupENSG00000057593
BioGRIDF7
STRING (EMBL)F7
ZODIACF7
Ontologies - Pathways
QuickGOP08709
Ontology : AmiGOglycoprotein binding  positive regulation of leukocyte chemotaxis  serine-type endopeptidase activity  receptor binding  calcium ion binding  protein binding  extracellular region  extracellular space  endoplasmic reticulum lumen  Golgi lumen  plasma membrane  signal peptide processing  ER to Golgi vesicle-mediated transport  blood coagulation  blood coagulation, extrinsic pathway  circadian rhythm  serine-type peptidase activity  positive regulation of platelet-derived growth factor receptor signaling pathway  peptidyl-glutamic acid carboxylation  positive regulation of blood coagulation  positive regulation of cell migration  organ regeneration  vesicle  response to vitamin K  response to estrogen  positive regulation of positive chemotaxis  positive regulation of protein kinase B signaling  response to growth hormone  
Ontology : EGO-EBIglycoprotein binding  positive regulation of leukocyte chemotaxis  serine-type endopeptidase activity  receptor binding  calcium ion binding  protein binding  extracellular region  extracellular space  endoplasmic reticulum lumen  Golgi lumen  plasma membrane  signal peptide processing  ER to Golgi vesicle-mediated transport  blood coagulation  blood coagulation, extrinsic pathway  circadian rhythm  serine-type peptidase activity  positive regulation of platelet-derived growth factor receptor signaling pathway  peptidyl-glutamic acid carboxylation  positive regulation of blood coagulation  positive regulation of cell migration  organ regeneration  vesicle  response to vitamin K  response to estrogen  positive regulation of positive chemotaxis  positive regulation of protein kinase B signaling  response to growth hormone  
Pathways : BIOCARTAExtrinsic Prothrombin Activation Pathway [Genes]    Acute Myocardial Infarction [Genes]   
Pathways : KEGGComplement and coagulation cascades   
NDEx Network
Atlas of Cancer Signalling NetworkF7
Wikipedia pathwaysF7
Orthology - Evolution
OrthoDB2155
GeneTree (enSembl)ENSG00000057593
Phylogenetic Trees/Animal Genes : TreeFamF7
Homologs : HomoloGeneF7
Homology/Alignments : Family Browser (UCSC)F7
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerF7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)F7
dbVarF7
ClinVarF7
1000_GenomesF7 
Exome Variant ServerF7
ExAC (Exome Aggregation Consortium)F7 (select the gene name)
Genetic variants : HAPMAP2155
Genomic Variants (DGV)F7 [DGVbeta]
Mutations
ICGC Data PortalF7 
TCGA Data PortalF7 
Broad Tumor PortalF7
OASIS PortalF7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICF7 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)EAHAD Coagulation Factor Variant Databases
BioMutasearch F7
DgiDB (Drug Gene Interaction Database)F7
DoCM (Curated mutations)F7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)F7 (select a term)
intoGenF7
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)13:113760102-113774995  ENSG00000057593
CONAN: Copy Number AnalysisF7 
Mutations and Diseases : HGMDF7
OMIM227500    608446    613878   
MedgenF7
Genetic Testing Registry F7
NextProtP08709 [Medical]
TSGene2155
GENETestsF7
Huge Navigator F7 [HugePedia]
snp3D : Map Gene to Disease2155
BioCentury BCIQF7
ClinGenF7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2155
Chemical/Pharm GKB GenePA160
Clinical trialF7
Miscellaneous
canSAR (ICR)F7 (select the gene name)
Probes
Litterature
PubMed416 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineF7
EVEXF7
GoPubMedF7
iHOPF7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 9 19:02:24 CEST 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.