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F8A2 (coagulation factor VIII-associated 2)

Identity

Alias_namescoagulation factor VIII-associated (intronic transcript) 2
Other alias-
HGNC (Hugo) F8A2
LocusID (NCBI) 474383
Atlas_Id 62963
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 154886375 and ends at 154887490 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)F8A2   31849
Cards
Entrez_Gene (NCBI)F8A2  474383  coagulation factor VIII-associated 2
Aliases
GeneCards (Weizmann)F8A2
Ensembl hg19 (Hinxton)ENSG00000274791 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274791 [Gene_View]  chrX:154886375-154887490 [Contig_View]  F8A2 [Vega]
ICGC DataPortalENSG00000274791
TCGA cBioPortalF8A2
AceView (NCBI)F8A2
Genatlas (Paris)F8A2
WikiGenes474383
SOURCE (Princeton)F8A2
Genetics Home Reference (NIH)F8A2
Genomic and cartography
GoldenPath hg38 (UCSC)F8A2  -     chrX:154886375-154887490 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)F8A2  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblF8A2 - Xq28 [CytoView hg19]  F8A2 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIF8A2 [Mapview hg19]  F8A2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039693 BC071963 BC172273
RefSeq transcript (Entrez)NM_001007523
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)F8A2
Cluster EST : UnigeneHs.731793 [ NCBI ]
CGAP (NCI)Hs.731793
Alternative Splicing GalleryENSG00000274791
Gene ExpressionF8A2 [ NCBI-GEO ]   F8A2 [ EBI - ARRAY_EXPRESS ]   F8A2 [ SEEK ]   F8A2 [ MEM ]
Gene Expression Viewer (FireBrowse)F8A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)474383
GTEX Portal (Tissue expression)F8A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP23610   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP23610  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP23610
Splice isoforms : SwissVarP23610
PhosPhoSitePlusP23610
Domains : Interpro (EBI)TPR-like_helical_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)F8A2
DMDM Disease mutations474383
Blocks (Seattle)F8A2
SuperfamilyP23610
Human Protein AtlasENSG00000274791
Peptide AtlasP23610
HPRD18665
IPIIPI00012433   
Protein Interaction databases
DIP (DOE-UCLA)P23610
IntAct (EBI)P23610
FunCoupENSG00000274791
BioGRIDF8A2
STRING (EMBL)F8A2
ZODIACF8A2
Ontologies - Pathways
QuickGOP23610
Ontology : AmiGOmolecular_function  nucleus  biological_process  
Ontology : EGO-EBImolecular_function  nucleus  biological_process  
NDEx NetworkF8A2
Atlas of Cancer Signalling NetworkF8A2
Wikipedia pathwaysF8A2
Orthology - Evolution
OrthoDB474383
GeneTree (enSembl)ENSG00000274791
Phylogenetic Trees/Animal Genes : TreeFamF8A2
HOVERGENP23610
HOGENOMP23610
Homologs : HomoloGeneF8A2
Homology/Alignments : Family Browser (UCSC)F8A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerF8A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)F8A2
dbVarF8A2
ClinVarF8A2
1000_GenomesF8A2 
Exome Variant ServerF8A2
ExAC (Exome Aggregation Consortium)F8A2 (select the gene name)
Genetic variants : HAPMAP474383
Genomic Variants (DGV)F8A2 [DGVbeta]
DECIPHERF8A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisF8A2 
Mutations
ICGC Data PortalF8A2 
TCGA Data PortalF8A2 
Broad Tumor PortalF8A2
OASIS PortalF8A2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDF8A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch F8A2
DgiDB (Drug Gene Interaction Database)F8A2
DoCM (Curated mutations)F8A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)F8A2 (select a term)
intoGenF8A2
Cancer3DF8A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenF8A2
Genetic Testing Registry F8A2
NextProtP23610 [Medical]
TSGene474383
GENETestsF8A2
Target ValidationF8A2
Huge Navigator F8A2 [HugePedia]
snp3D : Map Gene to Disease474383
BioCentury BCIQF8A2
ClinGenF8A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD474383
Chemical/Pharm GKB GenePA134939784
Clinical trialF8A2
Miscellaneous
canSAR (ICR)F8A2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineF8A2
EVEXF8A2
GoPubMedF8A2
iHOPF8A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:47:37 CEST 2017

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