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F8A3 (coagulation factor VIII-associated 3)

Identity

Alias_namescoagulation factor VIII-associated (intronic transcript) 3
Other alias-
HGNC (Hugo) F8A3
LocusID (NCBI) 474384
Atlas_Id 62964
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 154886375 and ends at 154887490 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TAGLN (11q23.3) / F8A3 (Xq28)TUBA1B (12q13.12) / F8A3 (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)F8A3   31850
Cards
Entrez_Gene (NCBI)F8A3  474384  coagulation factor VIII-associated 3
Aliases
GeneCards (Weizmann)F8A3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:154886375-154887490 [Contig_View]  F8A3 [Vega]
TCGA cBioPortalF8A3
AceView (NCBI)F8A3
Genatlas (Paris)F8A3
WikiGenes474384
SOURCE (Princeton)F8A3
Genetics Home Reference (NIH)F8A3
Genomic and cartography
GoldenPath hg38 (UCSC)F8A3  -     chrX:154886375-154887490 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)F8A3  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblF8A3 - Xq28 [CytoView hg19]  F8A3 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIF8A3 [Mapview hg19]  F8A3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039693 BC071963 BC156292
RefSeq transcript (Entrez)NM_001007524
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)F8A3
Cluster EST : UnigeneHs.533543 [ NCBI ]
CGAP (NCI)Hs.533543
Gene ExpressionF8A3 [ NCBI-GEO ]   F8A3 [ EBI - ARRAY_EXPRESS ]   F8A3 [ SEEK ]   F8A3 [ MEM ]
Gene Expression Viewer (FireBrowse)F8A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)474384
GTEX Portal (Tissue expression)F8A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP23610   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP23610  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP23610
Splice isoforms : SwissVarP23610
PhosPhoSitePlusP23610
Domains : Interpro (EBI)TPR-like_helical_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)F8A3
DMDM Disease mutations474384
Blocks (Seattle)F8A3
SuperfamilyP23610
Peptide AtlasP23610
HPRD18666
Protein Interaction databases
DIP (DOE-UCLA)P23610
IntAct (EBI)P23610
BioGRIDF8A3
STRING (EMBL)F8A3
ZODIACF8A3
Ontologies - Pathways
QuickGOP23610
Ontology : AmiGOmolecular_function  nucleus  biological_process  
Ontology : EGO-EBImolecular_function  nucleus  biological_process  
NDEx NetworkF8A3
Atlas of Cancer Signalling NetworkF8A3
Wikipedia pathwaysF8A3
Orthology - Evolution
OrthoDB474384
Phylogenetic Trees/Animal Genes : TreeFamF8A3
HOVERGENP23610
HOGENOMP23610
Homologs : HomoloGeneF8A3
Homology/Alignments : Family Browser (UCSC)F8A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerF8A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)F8A3
dbVarF8A3
ClinVarF8A3
1000_GenomesF8A3 
Exome Variant ServerF8A3
ExAC (Exome Aggregation Consortium)F8A3 (select the gene name)
Genetic variants : HAPMAP474384
Genomic Variants (DGV)F8A3 [DGVbeta]
DECIPHERF8A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisF8A3 
Mutations
ICGC Data PortalF8A3 
TCGA Data PortalF8A3 
Broad Tumor PortalF8A3
OASIS PortalF8A3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDF8A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch F8A3
DgiDB (Drug Gene Interaction Database)F8A3
DoCM (Curated mutations)F8A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)F8A3 (select a term)
intoGenF8A3
Cancer3DF8A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenF8A3
Genetic Testing Registry F8A3
NextProtP23610 [Medical]
TSGene474384
GENETestsF8A3
Target ValidationF8A3
Huge Navigator F8A3 [HugePedia]
snp3D : Map Gene to Disease474384
BioCentury BCIQF8A3
ClinGenF8A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD474384
Chemical/Pharm GKB GenePA134947289
Clinical trialF8A3
Miscellaneous
canSAR (ICR)F8A3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineF8A3
EVEXF8A3
GoPubMedF8A3
iHOPF8A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:28 CEST 2017

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