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FAAP20 (Fanconi anemia core complex associated protein 20)

Identity

Alias_namesC1orf86
chromosome 1 open reading frame 86
Alias_symbol (synonym)FLJ31031
Other aliasFP7162
HGNC (Hugo) FAAP20
LocusID (NCBI) 199990
Atlas_Id 52875
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 2184460 and ends at 2207733 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAAP20 (1p36.33) / PNO1 (2p14)FAAP20 (1p36.33) / ZC3H11A (1q32.1)SUCLA2 (13q14.2) / FAAP20 (1p36.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAAP20   26428
Cards
Entrez_Gene (NCBI)FAAP20  199990  Fanconi anemia core complex associated protein 20
AliasesC1orf86; FP7162
GeneCards (Weizmann)FAAP20
Ensembl hg19 (Hinxton)ENSG00000162585 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162585 [Gene_View]  chr1:2184460-2207733 [Contig_View]  FAAP20 [Vega]
ICGC DataPortalENSG00000162585
TCGA cBioPortalFAAP20
AceView (NCBI)FAAP20
Genatlas (Paris)FAAP20
WikiGenes199990
SOURCE (Princeton)FAAP20
Genetics Home Reference (NIH)FAAP20
Genomic and cartography
GoldenPath hg38 (UCSC)FAAP20  -     chr1:2184460-2207733 -  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAAP20  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblFAAP20 - 1p36.33 [CytoView hg19]  FAAP20 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIFAAP20 [Mapview hg19]  FAAP20 [Mapview hg38]
OMIM615183   
Gene and transcription
Genbank (Entrez)AF461903 AF469129 AK054818 AK055593 AK093927
RefSeq transcript (Entrez)NM_001146310 NM_001256945 NM_001256946 NM_001256947 NM_001282670 NM_001282671 NM_001282672 NM_001282673 NM_182533
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAAP20
Cluster EST : UnigeneHs.107101 [ NCBI ]
CGAP (NCI)Hs.107101
Alternative Splicing GalleryENSG00000162585
Gene ExpressionFAAP20 [ NCBI-GEO ]   FAAP20 [ EBI - ARRAY_EXPRESS ]   FAAP20 [ SEEK ]   FAAP20 [ MEM ]
Gene Expression Viewer (FireBrowse)FAAP20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)199990
GTEX Portal (Tissue expression)FAAP20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NZ36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NZ36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NZ36
Splice isoforms : SwissVarQ6NZ36
PhosPhoSitePlusQ6NZ36
Domains : Interpro (EBI)FANCA_interact    UBZ_FAAP20   
Domain families : Pfam (Sanger)FANCA_interact (PF15751)    UBZ_FAAP20 (PF15750)   
Domain families : Pfam (NCBI)pfam15751    pfam15750   
Conserved Domain (NCBI)FAAP20
DMDM Disease mutations199990
Blocks (Seattle)FAAP20
PDB (SRS)2MUQ    2MUR    3WWQ   
PDB (PDBSum)2MUQ    2MUR    3WWQ   
PDB (IMB)2MUQ    2MUR    3WWQ   
PDB (RSDB)2MUQ    2MUR    3WWQ   
Structural Biology KnowledgeBase2MUQ    2MUR    3WWQ   
SCOP (Structural Classification of Proteins)2MUQ    2MUR    3WWQ   
CATH (Classification of proteins structures)2MUQ    2MUR    3WWQ   
SuperfamilyQ6NZ36
Human Protein AtlasENSG00000162585
Peptide AtlasQ6NZ36
HPRD08707
IPIIPI00853460   IPI00444792   IPI00884953   IPI00852653   IPI00853401   IPI00852800   IPI01018337   IPI00167800   IPI00514775   IPI00852731   IPI00852646   
Protein Interaction databases
DIP (DOE-UCLA)Q6NZ36
IntAct (EBI)Q6NZ36
FunCoupENSG00000162585
BioGRIDFAAP20
STRING (EMBL)FAAP20
ZODIACFAAP20
Ontologies - Pathways
QuickGOQ6NZ36
Ontology : AmiGOprotein binding  nucleoplasm  nucleoplasm  chromosome  cellular response to DNA damage stimulus  nuclear body  translesion synthesis  cell junction  polyubiquitin binding  interstrand cross-link repair  interstrand cross-link repair  ubiquitin binding  Fanconi anaemia nuclear complex  metal ion binding  K63-linked polyubiquitin binding  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleoplasm  chromosome  cellular response to DNA damage stimulus  nuclear body  translesion synthesis  cell junction  polyubiquitin binding  interstrand cross-link repair  interstrand cross-link repair  ubiquitin binding  Fanconi anaemia nuclear complex  metal ion binding  K63-linked polyubiquitin binding  
NDEx NetworkFAAP20
Atlas of Cancer Signalling NetworkFAAP20
Wikipedia pathwaysFAAP20
Orthology - Evolution
OrthoDB199990
GeneTree (enSembl)ENSG00000162585
Phylogenetic Trees/Animal Genes : TreeFamFAAP20
HOVERGENQ6NZ36
HOGENOMQ6NZ36
Homologs : HomoloGeneFAAP20
Homology/Alignments : Family Browser (UCSC)FAAP20
Gene fusions - Rearrangements
Fusion : MitelmanFAAP20/ZC3H11A [1p36.33/1q32.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAAP20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAAP20
dbVarFAAP20
ClinVarFAAP20
1000_GenomesFAAP20 
Exome Variant ServerFAAP20
ExAC (Exome Aggregation Consortium)FAAP20 (select the gene name)
Genetic variants : HAPMAP199990
Genomic Variants (DGV)FAAP20 [DGVbeta]
DECIPHERFAAP20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAAP20 
Mutations
ICGC Data PortalFAAP20 
TCGA Data PortalFAAP20 
Broad Tumor PortalFAAP20
OASIS PortalFAAP20 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAAP20
BioMutasearch FAAP20
DgiDB (Drug Gene Interaction Database)FAAP20
DoCM (Curated mutations)FAAP20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAAP20 (select a term)
intoGenFAAP20
Cancer3DFAAP20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615183   
Orphanet
MedgenFAAP20
Genetic Testing Registry FAAP20
NextProtQ6NZ36 [Medical]
TSGene199990
GENETestsFAAP20
Huge Navigator FAAP20 [HugePedia]
snp3D : Map Gene to Disease199990
BioCentury BCIQFAAP20
ClinGenFAAP20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD199990
Chemical/Pharm GKB GenePA142672470
Clinical trialFAAP20
Miscellaneous
canSAR (ICR)FAAP20 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAAP20
EVEXFAAP20
GoPubMedFAAP20
iHOPFAAP20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:15:15 CEST 2017

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