Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAAP24 (Fanconi anemia core complex associated protein 24)

Identity

Alias_names24kDa
C19orf40
Alias_symbol (synonym)FLJ46828
MGC32020
Other alias
HGNC (Hugo) FAAP24
LocusID (NCBI) 91442
Atlas_Id 42944
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 33463123 and ends at 33468401 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)FAAP24   28467
Cards
Entrez_Gene (NCBI)FAAP24  91442  Fanconi anemia core complex associated protein 24
AliasesC19orf40
GeneCards (Weizmann)FAAP24
Ensembl hg19 (Hinxton)ENSG00000131944 [Gene_View]  chr19:33463123-33468401 [Contig_View]  FAAP24 [Vega]
Ensembl hg38 (Hinxton)ENSG00000131944 [Gene_View]  chr19:33463123-33468401 [Contig_View]  FAAP24 [Vega]
ICGC DataPortalENSG00000131944
TCGA cBioPortalFAAP24
AceView (NCBI)FAAP24
Genatlas (Paris)FAAP24
WikiGenes91442
SOURCE (Princeton)FAAP24
Genetics Home Reference (NIH)FAAP24
Genomic and cartography
GoldenPath hg19 (UCSC)FAAP24  -     chr19:33463123-33468401 +  19q13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAAP24  -     19q13.11   [Description]    (hg38-Dec_2013)
EnsemblFAAP24 - 19q13.11 [CytoView hg19]  FAAP24 - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBIFAAP24 [Mapview hg19]  FAAP24 [Mapview hg38]
OMIM610884   
Gene and transcription
Genbank (Entrez)AK128668 BC003535 BC010170 BC020247 BM679170
RefSeq transcript (Entrez)NM_001300978 NM_152266
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)FAAP24
Cluster EST : UnigeneHs.579899 [ NCBI ]
CGAP (NCI)Hs.579899
Alternative Splicing GalleryENSG00000131944
Gene ExpressionFAAP24 [ NCBI-GEO ]   FAAP24 [ EBI - ARRAY_EXPRESS ]   FAAP24 [ SEEK ]   FAAP24 [ MEM ]
Gene Expression Viewer (FireBrowse)FAAP24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91442
GTEX Portal (Tissue expression)FAAP24
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTP7
Splice isoforms : SwissVarQ9BTP7
PhosPhoSitePlusQ9BTP7
Domains : Interpro (EBI)FAAP24    RuvA_2-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAAP24
DMDM Disease mutations91442
Blocks (Seattle)FAAP24
PDB (SRS)2LYH    2M9M    2M9N    4BXO    4M6W   
PDB (PDBSum)2LYH    2M9M    2M9N    4BXO    4M6W   
PDB (IMB)2LYH    2M9M    2M9N    4BXO    4M6W   
PDB (RSDB)2LYH    2M9M    2M9N    4BXO    4M6W   
Structural Biology KnowledgeBase2LYH    2M9M    2M9N    4BXO    4M6W   
SCOP (Structural Classification of Proteins)2LYH    2M9M    2M9N    4BXO    4M6W   
CATH (Classification of proteins structures)2LYH    2M9M    2M9N    4BXO    4M6W   
SuperfamilyQ9BTP7
Human Protein AtlasENSG00000131944
Peptide AtlasQ9BTP7
HPRD14547
IPIIPI00329737   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTP7
IntAct (EBI)Q9BTP7
FunCoupENSG00000131944
BioGRIDFAAP24
STRING (EMBL)FAAP24
ZODIACFAAP24
Ontologies - Pathways
QuickGOQ9BTP7
Ontology : AmiGODNA binding  chromatin binding  protein binding  nucleoplasm  nucleoplasm  interstrand cross-link repair  intracellular membrane-bounded organelle  Fanconi anaemia nuclear complex  
Ontology : EGO-EBIDNA binding  chromatin binding  protein binding  nucleoplasm  nucleoplasm  interstrand cross-link repair  intracellular membrane-bounded organelle  Fanconi anaemia nuclear complex  
NDEx NetworkFAAP24
Atlas of Cancer Signalling NetworkFAAP24
Wikipedia pathwaysFAAP24
Orthology - Evolution
OrthoDB91442
GeneTree (enSembl)ENSG00000131944
Phylogenetic Trees/Animal Genes : TreeFamFAAP24
HOVERGENQ9BTP7
HOGENOMQ9BTP7
Homologs : HomoloGeneFAAP24
Homology/Alignments : Family Browser (UCSC)FAAP24
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAAP24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAAP24
dbVarFAAP24
ClinVarFAAP24
1000_GenomesFAAP24 
Exome Variant ServerFAAP24
ExAC (Exome Aggregation Consortium)FAAP24 (select the gene name)
Genetic variants : HAPMAP91442
Genomic Variants (DGV)FAAP24 [DGVbeta]
DECIPHER (Syndromes)19:33463123-33468401  ENSG00000131944
CONAN: Copy Number AnalysisFAAP24 
Mutations
ICGC Data PortalFAAP24 
TCGA Data PortalFAAP24 
Broad Tumor PortalFAAP24
OASIS PortalFAAP24 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAAP24
BioMutasearch FAAP24
DgiDB (Drug Gene Interaction Database)FAAP24
DoCM (Curated mutations)FAAP24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAAP24 (select a term)
intoGenFAAP24
Cancer3DFAAP24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610884   
Orphanet
MedgenFAAP24
Genetic Testing Registry FAAP24
NextProtQ9BTP7 [Medical]
TSGene91442
GENETestsFAAP24
Huge Navigator FAAP24 [HugePedia]
snp3D : Map Gene to Disease91442
BioCentury BCIQFAAP24
ClinGenFAAP24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91442
Chemical/Pharm GKB GenePA144596473
Clinical trialFAAP24
Miscellaneous
canSAR (ICR)FAAP24 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAAP24
EVEXFAAP24
GoPubMedFAAP24
iHOPFAAP24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:05:17 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.