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FABP12 (fatty acid binding protein 12)

Identity

Other alias-
HGNC (Hugo) FABP12
LocusID (NCBI) 646486
Atlas_Id 62968
Location 8q21.13  [Link to chromosome band 8q21]
Location_base_pair Starts at 82437281 and ends at 82443550 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FABP12   34524
Cards
Entrez_Gene (NCBI)FABP12  646486  fatty acid binding protein 12
Aliases
GeneCards (Weizmann)FABP12
Ensembl hg19 (Hinxton)ENSG00000197416 [Gene_View]  chr8:82437281-82443550 [Contig_View]  FABP12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197416 [Gene_View]  chr8:82437281-82443550 [Contig_View]  FABP12 [Vega]
ICGC DataPortalENSG00000197416
TCGA cBioPortalFABP12
AceView (NCBI)FABP12
Genatlas (Paris)FABP12
WikiGenes646486
SOURCE (Princeton)FABP12
Genetics Home Reference (NIH)FABP12
Genomic and cartography
GoldenPath hg19 (UCSC)FABP12  -     chr8:82437281-82443550 -  8q21.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FABP12  -     8q21.13   [Description]    (hg38-Dec_2013)
EnsemblFABP12 - 8q21.13 [CytoView hg19]  FABP12 - 8q21.13 [CytoView hg38]
Mapping of homologs : NCBIFABP12 [Mapview hg19]  FABP12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC146973 BC146981 EU733650
RefSeq transcript (Entrez)NM_001105281
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)FABP12
Cluster EST : UnigeneHs.586370 [ NCBI ]
CGAP (NCI)Hs.586370
Alternative Splicing GalleryENSG00000197416
Gene ExpressionFABP12 [ NCBI-GEO ]   FABP12 [ EBI - ARRAY_EXPRESS ]   FABP12 [ SEEK ]   FABP12 [ MEM ]
Gene Expression Viewer (FireBrowse)FABP12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646486
GTEX Portal (Tissue expression)FABP12
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NFH5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NFH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NFH5
Splice isoforms : SwissVarA6NFH5
PhosPhoSitePlusA6NFH5
Domains : Interpro (EBI)Calycin    Calycin-like    Fatty_acid-bd    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)FABP12
DMDM Disease mutations646486
Blocks (Seattle)FABP12
SuperfamilyA6NFH5
Human Protein AtlasENSG00000197416
Peptide AtlasA6NFH5
IPIIPI00477693   IPI00980094   
Protein Interaction databases
DIP (DOE-UCLA)A6NFH5
IntAct (EBI)A6NFH5
FunCoupENSG00000197416
BioGRIDFABP12
STRING (EMBL)FABP12
ZODIACFABP12
Ontologies - Pathways
QuickGOA6NFH5
Ontology : AmiGOtransporter activity  cytosol  transport  lipid binding  triglyceride catabolic process  small molecule metabolic process  
Ontology : EGO-EBItransporter activity  cytosol  transport  lipid binding  triglyceride catabolic process  small molecule metabolic process  
NDEx NetworkFABP12
Atlas of Cancer Signalling NetworkFABP12
Wikipedia pathwaysFABP12
Orthology - Evolution
OrthoDB646486
GeneTree (enSembl)ENSG00000197416
Phylogenetic Trees/Animal Genes : TreeFamFABP12
HOVERGENA6NFH5
HOGENOMA6NFH5
Homologs : HomoloGeneFABP12
Homology/Alignments : Family Browser (UCSC)FABP12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFABP12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FABP12
dbVarFABP12
ClinVarFABP12
1000_GenomesFABP12 
Exome Variant ServerFABP12
ExAC (Exome Aggregation Consortium)FABP12 (select the gene name)
Genetic variants : HAPMAP646486
Genomic Variants (DGV)FABP12 [DGVbeta]
DECIPHER (Syndromes)8:82437281-82443550  ENSG00000197416
CONAN: Copy Number AnalysisFABP12 
Mutations
ICGC Data PortalFABP12 
TCGA Data PortalFABP12 
Broad Tumor PortalFABP12
OASIS PortalFABP12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFABP12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFABP12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FABP12
DgiDB (Drug Gene Interaction Database)FABP12
DoCM (Curated mutations)FABP12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FABP12 (select a term)
intoGenFABP12
Cancer3DFABP12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFABP12
Genetic Testing Registry FABP12
NextProtA6NFH5 [Medical]
TSGene646486
GENETestsFABP12
Huge Navigator FABP12 [HugePedia]
snp3D : Map Gene to Disease646486
BioCentury BCIQFABP12
ClinGenFABP12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646486
Chemical/Pharm GKB GenePA164719513
Clinical trialFABP12
Miscellaneous
canSAR (ICR)FABP12 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFABP12
EVEXFABP12
GoPubMedFABP12
iHOPFABP12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:20 CET 2017

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