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FABP2 (fatty acid binding protein 2)

Identity

Alias (NCBI)FABPI
I-FABP
HGNC (Hugo) FABP2
HGNC Alias symbI-FABP
HGNC Previous namefatty acid binding protein 2, intestinal
LocusID (NCBI) 2169
Atlas_Id 45921
Location 4q26  [Link to chromosome band 4q26]
Location_base_pair Starts at 119317250 and ends at 119322138 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FABP2 (4q26)::C4orf3 (4q26)FABP2 (4q26)::MBOAT2 (2p25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FABP2   3556
Cards
Entrez_Gene (NCBI)FABP2    fatty acid binding protein 2
AliasesFABPI; I-FABP
GeneCards (Weizmann)FABP2
Ensembl hg19 (Hinxton)ENSG00000145384 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145384 [Gene_View]  ENSG00000145384 [Sequence]  chr4:119317250-119322138 [Contig_View]  FABP2 [Vega]
ICGC DataPortalENSG00000145384
TCGA cBioPortalFABP2
AceView (NCBI)FABP2
Genatlas (Paris)FABP2
SOURCE (Princeton)FABP2
Genetics Home Reference (NIH)FABP2
Genomic and cartography
GoldenPath hg38 (UCSC)FABP2  -     chr4:119317250-119322138 -  4q26   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FABP2  -     4q26   [Description]    (hg19-Feb_2009)
GoldenPathFABP2 - 4q26 [CytoView hg19]  FABP2 - 4q26 [CytoView hg38]
ImmunoBaseENSG00000145384
Genome Data Viewer NCBIFABP2 [Mapview hg19]  
OMIM134640   
Gene and transcription
Genbank (Entrez)AK025079 BC069466 BC069617 BC069625 BC069637
RefSeq transcript (Entrez)NM_000134
Consensus coding sequences : CCDS (NCBI)FABP2
Gene ExpressionFABP2 [ NCBI-GEO ]   FABP2 [ EBI - ARRAY_EXPRESS ]   FABP2 [ SEEK ]   FABP2 [ MEM ]
Gene Expression Viewer (FireBrowse)FABP2 [ Firebrowse - Broad ]
GenevisibleExpression of FABP2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2169
GTEX Portal (Tissue expression)FABP2
Human Protein AtlasENSG00000145384-FABP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP12104   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP12104  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP12104
PhosPhoSitePlusP12104
Domaine pattern : Prosite (Expaxy)FABP (PS00214)   
Domains : Interpro (EBI)Calycin    FABP2    Fatty_acid-bd    ILBP    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)FABP2
PDB (RSDB)1KZW    1KZX    2MJI    2MO5    3AKM    3IFB    6L7K   
PDB Europe1KZW    1KZX    2MJI    2MO5    3AKM    3IFB    6L7K   
PDB (PDBSum)1KZW    1KZX    2MJI    2MO5    3AKM    3IFB    6L7K   
PDB (IMB)1KZW    1KZX    2MJI    2MO5    3AKM    3IFB    6L7K   
Structural Biology KnowledgeBase1KZW    1KZX    2MJI    2MO5    3AKM    3IFB    6L7K   
SCOP (Structural Classification of Proteins)1KZW    1KZX    2MJI    2MO5    3AKM    3IFB    6L7K   
CATH (Classification of proteins structures)1KZW    1KZX    2MJI    2MO5    3AKM    3IFB    6L7K   
SuperfamilyP12104
AlphaFold pdb e-kbP12104   
Human Protein Atlas [tissue]ENSG00000145384-FABP2 [tissue]
HPRD00611
Protein Interaction databases
DIP (DOE-UCLA)P12104
IntAct (EBI)P12104
BioGRIDFABP2
STRING (EMBL)FABP2
ZODIACFABP2
Ontologies - Pathways
QuickGOP12104
Ontology : AmiGOlong-chain fatty acid transporter activity  fatty acid binding  protein binding  nucleus  cytosol  cytosol  plasma membrane  microvillus  fatty acid metabolic process  fatty acid transport  long-chain fatty acid transport  long-chain fatty acid binding  long-chain fatty acid binding  apical cortex  intestinal lipid absorption  
Ontology : EGO-EBIlong-chain fatty acid transporter activity  fatty acid binding  protein binding  nucleus  cytosol  cytosol  plasma membrane  microvillus  fatty acid metabolic process  fatty acid transport  long-chain fatty acid transport  long-chain fatty acid binding  long-chain fatty acid binding  apical cortex  intestinal lipid absorption  
Pathways : KEGGKEGG_PPAR_SIGNALING   
NDEx NetworkFABP2
Atlas of Cancer Signalling NetworkFABP2
Wikipedia pathwaysFABP2
Orthology - Evolution
OrthoDB2169
GeneTree (enSembl)ENSG00000145384
Phylogenetic Trees/Animal Genes : TreeFamFABP2
Homologs : HomoloGeneFABP2
Homology/Alignments : Family Browser (UCSC)FABP2
Gene fusions - Rearrangements
Fusion : QuiverFABP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFABP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FABP2
dbVarFABP2
ClinVarFABP2
MonarchFABP2
1000_GenomesFABP2 
Exome Variant ServerFABP2
GNOMAD BrowserENSG00000145384
Varsome BrowserFABP2
ACMGFABP2 variants
VarityP12104
Genomic Variants (DGV)FABP2 [DGVbeta]
DECIPHERFABP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFABP2 
Mutations
ICGC Data PortalFABP2 
TCGA Data PortalFABP2 
Broad Tumor PortalFABP2
OASIS PortalFABP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFABP2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFABP2
Mutations and Diseases : HGMDFABP2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFABP2
DgiDB (Drug Gene Interaction Database)FABP2
DoCM (Curated mutations)FABP2
CIViC (Clinical Interpretations of Variants in Cancer)FABP2
Cancer3DFABP2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM134640   
Orphanet
DisGeNETFABP2
MedgenFABP2
Genetic Testing Registry FABP2
NextProtP12104 [Medical]
GENETestsFABP2
Target ValidationFABP2
Huge Navigator FABP2 [HugePedia]
ClinGenFABP2
Clinical trials, drugs, therapy
MyCancerGenomeFABP2
Protein Interactions : CTDFABP2
Pharm GKB GenePA27957
PharosP12104
Clinical trialFABP2
Miscellaneous
canSAR (ICR)FABP2
HarmonizomeFABP2
ARCHS4FABP2
DataMed IndexFABP2
Probes
Litterature
PubMed204 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFABP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:32:50 CET 2022

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