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FABP2 (fatty acid binding protein 2)

Identity

Alias_namesfatty acid binding protein 2
Alias_symbol (synonym)I-FABP
Other aliasFABPI
HGNC (Hugo) FABP2
LocusID (NCBI) 2169
Atlas_Id 45921
Location 4q26  [Link to chromosome band 4q26]
Location_base_pair Starts at 120238405 and ends at 120243316 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FABP2 (4q26) / C4orf3 (4q26)FABP2 (4q26) / MBOAT2 (2p25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FABP2   3556
Cards
Entrez_Gene (NCBI)FABP2  2169  fatty acid binding protein 2
AliasesFABPI; I-FABP
GeneCards (Weizmann)FABP2
Ensembl hg19 (Hinxton)ENSG00000145384 [Gene_View]  chr4:120238405-120243316 [Contig_View]  FABP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000145384 [Gene_View]  chr4:120238405-120243316 [Contig_View]  FABP2 [Vega]
ICGC DataPortalENSG00000145384
TCGA cBioPortalFABP2
AceView (NCBI)FABP2
Genatlas (Paris)FABP2
WikiGenes2169
SOURCE (Princeton)FABP2
Genetics Home Reference (NIH)FABP2
Genomic and cartography
GoldenPath hg19 (UCSC)FABP2  -     chr4:120238405-120243316 -  4q26   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FABP2  -     4q26   [Description]    (hg38-Dec_2013)
EnsemblFABP2 - 4q26 [CytoView hg19]  FABP2 - 4q26 [CytoView hg38]
Mapping of homologs : NCBIFABP2 [Mapview hg19]  FABP2 [Mapview hg38]
OMIM134640   
Gene and transcription
Genbank (Entrez)AK025079 BC069466 BC069617 BC069625 BC069637
RefSeq transcript (Entrez)NM_000134
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_011444 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)FABP2
Cluster EST : UnigeneHs.282265 [ NCBI ]
CGAP (NCI)Hs.282265
Alternative Splicing GalleryENSG00000145384
Gene ExpressionFABP2 [ NCBI-GEO ]   FABP2 [ EBI - ARRAY_EXPRESS ]   FABP2 [ SEEK ]   FABP2 [ MEM ]
Gene Expression Viewer (FireBrowse)FABP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2169
GTEX Portal (Tissue expression)FABP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP12104   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP12104  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP12104
Splice isoforms : SwissVarP12104
PhosPhoSitePlusP12104
Domaine pattern : Prosite (Expaxy)FABP (PS00214)   
Domains : Interpro (EBI)Calycin    Calycin-like    FABP2    Fatty_acid-bd    iLBP    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)FABP2
DMDM Disease mutations2169
Blocks (Seattle)FABP2
PDB (SRS)1KZW    1KZX    2MJI    2MO5    3AKM    3IFB   
PDB (PDBSum)1KZW    1KZX    2MJI    2MO5    3AKM    3IFB   
PDB (IMB)1KZW    1KZX    2MJI    2MO5    3AKM    3IFB   
PDB (RSDB)1KZW    1KZX    2MJI    2MO5    3AKM    3IFB   
Structural Biology KnowledgeBase1KZW    1KZX    2MJI    2MO5    3AKM    3IFB   
SCOP (Structural Classification of Proteins)1KZW    1KZX    2MJI    2MO5    3AKM    3IFB   
CATH (Classification of proteins structures)1KZW    1KZX    2MJI    2MO5    3AKM    3IFB   
SuperfamilyP12104
Human Protein AtlasENSG00000145384
Peptide AtlasP12104
HPRD00611
IPIIPI00218477   
Protein Interaction databases
DIP (DOE-UCLA)P12104
IntAct (EBI)P12104
FunCoupENSG00000145384
BioGRIDFABP2
STRING (EMBL)FABP2
ZODIACFABP2
Ontologies - Pathways
QuickGOP12104
Ontology : AmiGOtransporter activity  fatty acid binding  protein binding  cytosol  transport  digestion  triglyceride catabolic process  
Ontology : EGO-EBItransporter activity  fatty acid binding  protein binding  cytosol  transport  digestion  triglyceride catabolic process  
Pathways : KEGGPPAR signaling pathway    Fat digestion and absorption   
NDEx NetworkFABP2
Atlas of Cancer Signalling NetworkFABP2
Wikipedia pathwaysFABP2
Orthology - Evolution
OrthoDB2169
GeneTree (enSembl)ENSG00000145384
Phylogenetic Trees/Animal Genes : TreeFamFABP2
HOVERGENP12104
HOGENOMP12104
Homologs : HomoloGeneFABP2
Homology/Alignments : Family Browser (UCSC)FABP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFABP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FABP2
dbVarFABP2
ClinVarFABP2
1000_GenomesFABP2 
Exome Variant ServerFABP2
ExAC (Exome Aggregation Consortium)FABP2 (select the gene name)
Genetic variants : HAPMAP2169
Genomic Variants (DGV)FABP2 [DGVbeta]
DECIPHER (Syndromes)4:120238405-120243316  ENSG00000145384
CONAN: Copy Number AnalysisFABP2 
Mutations
ICGC Data PortalFABP2 
TCGA Data PortalFABP2 
Broad Tumor PortalFABP2
OASIS PortalFABP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFABP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFABP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FABP2
DgiDB (Drug Gene Interaction Database)FABP2
DoCM (Curated mutations)FABP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FABP2 (select a term)
intoGenFABP2
Cancer3DFABP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM134640   
Orphanet
MedgenFABP2
Genetic Testing Registry FABP2
NextProtP12104 [Medical]
TSGene2169
GENETestsFABP2
Huge Navigator FABP2 [HugePedia]
snp3D : Map Gene to Disease2169
BioCentury BCIQFABP2
ClinGenFABP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2169
Chemical/Pharm GKB GenePA27957
Clinical trialFABP2
Miscellaneous
canSAR (ICR)FABP2 (select the gene name)
Probes
Litterature
PubMed173 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFABP2
EVEXFABP2
GoPubMedFABP2
iHOPFABP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:05:17 CET 2017

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