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FABP3 (fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor))

Identity

Other namesFABP11
H-FABP
MDGI
O-FABP
HGNC (Hugo) FABP3
Location 1p35.2
Location_base_pair Starts at 31610687 and ends at 31618510 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FABP3   3557
Entrez_Gene (NCBI)FABP3  2170  fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)
Cards
GeneCards (Weizmann)FABP3
Ensembl (Hinxton)ENSG00000121769 [Gene_View]  FABP3 [Vega]
AceView (NCBI)FABP3
Genatlas (Paris)FABP3
euGene (Indiana)2170
SOURCE (Stanford)NM_004102
Gene Expression (Array Express) ENSG00000121769
Genomic and cartography
GoldenPath (UCSC)FABP3  -  1p35.2   chr1:31610687-31618510 -  1p35.2   [Description]    (hg18-March_2006)
EnsemblFABP3 - 1p35.2 [CytoView]
Mapping of homologs : NCBIFABP3 [Mapview]
OMIM134651   
Gene and transcription
Gene : Genbank (Entrez)AI494244 AK314122 BC007021 BT006727 CR456867
Reference sequence (RefSeq transcript) :SRSNM_004102
Reference transcript : EntrezNM_004102
RefSeq genomic : SRSAC_000044 AC_000133 NC_000001 NT_032977 NW_001838577 NW_921351
RefSeq genomic : EntrezAC_000044 AC_000133 NC_000001 NT_032977 NW_001838577 NW_921351
Consensus coding sequences : CCDS NCBIFABP3
Cluster EST : UnigeneHs.657242 [ SRS ] Hs.657242 [ NCBI ]
Alternative Splicing : Fast-db (Paris)12523
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP05413 (SRS) P05413 (Expasy) P05413 (Uniprot)
With graphics : InterProP05413
Splice isoforms : VarSplice FASTAP05413(VarSplice FASTA)
Domaine pattern : Prosite (SRS)FABP (PS00214)   
Domain pattern : Prosite (Expaxy)FABP (PS00214)   
Domains : Interpro (SRS)Calycin    Calycin-like    Fatty_acid_bd    Lipocln_cytFABP   
Domains : Interpro (EBI)Calycin    Calycin-like    Fatty_acid_bd    Lipocln_cytFABP   
Related proteins : CluSTrP05413
Domain families : Pfam SRSLipocalin (PF00061)   
Domain families : Pfam SangerLipocalin (PF00061)   
Domain families : Pfam NCBIpfam00061   
Blocks (Seattle)P05413
Crystal structure of protein : PDB SRS1G5W    1HMR    1HMS    1HMT    2HMB   
Crystal structure of protein : PDBSum1G5W    1HMR    1HMS    1HMT    2HMB   
Crystal structure of protein : IMB1G5W    1HMR    1HMS    1HMT    2HMB   
Crystal structure of protein : PDB RSDB1G5W    1HMR    1HMS    1HMT    2HMB   
HPRD00613
Protein Interaction databases
DIP (DOE-UCLA)P05413
IntAct (EBI)P05413
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIFABP3
SNP : GeneSNP UtahFABP3
SNP : HGBaseFABP3
Genetic variants : HAPMAPFABP3
Somatic Mutations in Cancer : COSMICFABP3 
Mutations and Diseases : HGMDFABP3
Hereditary diseases : OMIM134651   
Hereditary diseases : GENETests134651   
Diseases : Genetic AssociationFABP3
General knowledge
Homologs : HomoloGeneFABP3
Homology/Alignments : Family Browser UCSCFABP3
Phylogenetic Trees/Animal Genes : TreeFamFABP3
Chemical/Protein Interactions : CTD2170
Keywords Ontology : AmiGOtransporter activity  long-chain fatty acid transporter activity  fatty acid binding  cytoplasm  cytosol  fatty acid metabolic process  phosphatidylcholine biosynthetic process  transport  negative regulation of cell proliferation  long-chain fatty acid transport  response to insulin stimulus  response to drug  icosatetraenoic acid binding  response to fatty acid  
Keywords Ontology : EGO-EBItransporter activity  long-chain fatty acid transporter activity  fatty acid binding  cytoplasm  cytosol  fatty acid metabolic process  phosphatidylcholine biosynthetic process  transport  negative regulation of cell proliferation  long-chain fatty acid transport  response to insulin stimulus  response to drug  icosatetraenoic acid binding  response to fatty acid  
Pathways : BIOCARTA
Pathways : KEGGPPAR signaling pathway
Other databases
Probes
Probes : ImagenesFABP3 Related clones (RZPD - Berlin)
Literature
PubMed40 Pubmed reference(s) in Entrez
PubGeneFABP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 6 13:33:44 CET 2010
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