Atlas of Genetics and Cytogenetics in Oncology and Haematology

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FABP5 (fatty acid binding protein 5 (psoriasis-associated))

Identity

Other namesE-FABP
EFABP
PA-FABP
PAFABP
HGNC (Hugo) FABP5
Location 8q21.13
Location_base_pair Starts at 82355340 and ends at 82359563 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FABP5   3560
Entrez_Gene (NCBI)FABP5  2171  fatty acid binding protein 5 (psoriasis-associated)
Cards
GeneCards (Weizmann)FABP5
Ensembl (Hinxton)ENSG00000164687 [Gene_View]  FABP5 [Vega]
AceView (NCBI)FABP5
Genatlas (Paris)FABP5
euGene (Indiana)2171
SOURCE (Stanford)NM_001444
Gene Expression (Array Express) ENSG00000164687
Genomic and cartography
GoldenPath (UCSC)FABP5  -  8q21.13   chr8:82355340-82359563 +  8q21.13   [Description]    (hg18-March_2006)
EnsemblFABP5 - 8q21.13 [CytoView]
Mapping of homologs : NCBIFABP5 [Mapview]
OMIM605168   
Gene and transcription
Gene : Genbank (Entrez)AK226036 AK311856 BC019385 BC070303 BT007449
Reference sequence (RefSeq transcript) :SRSNM_001444
Reference transcript : EntrezNM_001444
RefSeq genomic : SRSAC_000051 AC_000068 AC_000140 NC_000008 NT_008183 NT_079596 NW_001839133 NW_923929
RefSeq genomic : EntrezAC_000051 AC_000068 AC_000140 NC_000008 NT_008183 NT_079596 NW_001839133 NW_923929
Consensus coding sequences : CCDS NCBIFABP5
Cluster EST : UnigeneHs.408061 [ SRS ] Hs.408061 [ NCBI ]
Alternative Splicing : Fast-db (Paris)6301
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ01469 (SRS) Q01469 (Expasy) Q01469 (Uniprot)
With graphics : InterProQ01469
Splice isoforms : VarSplice FASTAQ01469(VarSplice FASTA)
Domaine pattern : Prosite (SRS)FABP (PS00214)   
Domain pattern : Prosite (Expaxy)FABP (PS00214)   
Domains : Interpro (SRS)Calycin    Calycin-like    Fatty_acid_bd    Lipocln_cytFABP   
Domains : Interpro (EBI)Calycin    Calycin-like    Fatty_acid_bd    Lipocln_cytFABP   
Related proteins : CluSTrQ01469
Domain families : Pfam SRSLipocalin (PF00061)   
Domain families : Pfam SangerLipocalin (PF00061)   
Domain families : Pfam NCBIpfam00061   
Blocks (Seattle)Q01469
Crystal structure of protein : PDB SRS1B56    1JJJ   
Crystal structure of protein : PDBSum1B56    1JJJ   
Crystal structure of protein : IMB1B56    1JJJ   
Crystal structure of protein : PDB RSDB1B56    1JJJ   
HPRD05524
Protein Interaction databases
DIP (DOE-UCLA)Q01469
IntAct (EBI)Q01469
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIFABP5
SNP : GeneSNP UtahFABP5
SNP : HGBaseFABP5
Genetic variants : HAPMAPFABP5
Somatic Mutations in Cancer : COSMICFABP5 
Mutations and Diseases : HGMDFABP5
Hereditary diseases : OMIM605168   
Hereditary diseases : GENETests605168   
Diseases : Genetic AssociationFABP5
General knowledge
Homologs : HomoloGeneFABP5
Homology/Alignments : Family Browser UCSCFABP5
Phylogenetic Trees/Animal Genes : TreeFamFABP5
Chemical/Protein Interactions : CTD2171
Keywords Ontology : AmiGOtransporter activity  fatty acid binding  protein binding  cytoplasm  lipid metabolic process  transport  epidermis development  
Keywords Ontology : EGO-EBItransporter activity  fatty acid binding  protein binding  cytoplasm  lipid metabolic process  transport  epidermis development  
Pathways : BIOCARTA
Pathways : KEGGPPAR signaling pathway
Other databases
Probes
Probes : ImagenesFABP5 Related clones (RZPD - Berlin)
Literature
PubMed33 Pubmed reference(s) in Entrez
PubGeneFABP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:43:53 CET 2010
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