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FABP5P3 (fatty acid binding protein 5 pseudogene 3)

Identity

Alias_namesFABP5L3
fatty acid binding protein 5-like 3
fatty acid binding protein 5-like 3 (pseudogene)
Alias_symbol (synonym)TCAG_1781704
Other alias
HGNC (Hugo) FABP5P3
LocusID (NCBI) 220832
Atlas_Id 62969
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 152436895 and ends at 152443015 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FABP5P3   22573
Cards
Entrez_Gene (NCBI)FABP5P3  220832  fatty acid binding protein 5 pseudogene 3
AliasesFABP5L3
GeneCards (Weizmann)FABP5P3
Ensembl hg19 (Hinxton)ENSG00000241735 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241735 [Gene_View]  chr7:152436895-152443015 [Contig_View]  FABP5P3 [Vega]
ICGC DataPortalENSG00000241735
TCGA cBioPortalFABP5P3
AceView (NCBI)FABP5P3
Genatlas (Paris)FABP5P3
WikiGenes220832
SOURCE (Princeton)FABP5P3
Genetics Home Reference (NIH)FABP5P3
Genomic and cartography
GoldenPath hg38 (UCSC)FABP5P3  -     chr7:152436895-152443015 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FABP5P3  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblFABP5P3 - 7q36.1 [CytoView hg19]  FABP5P3 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIFABP5P3 [Mapview hg19]  FABP5P3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX338084
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FABP5P3
Cluster EST : UnigeneHs.647108 [ NCBI ]
CGAP (NCI)Hs.647108
Alternative Splicing GalleryENSG00000241735
Gene ExpressionFABP5P3 [ NCBI-GEO ]   FABP5P3 [ EBI - ARRAY_EXPRESS ]   FABP5P3 [ SEEK ]   FABP5P3 [ MEM ]
Gene Expression Viewer (FireBrowse)FABP5P3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220832
GTEX Portal (Tissue expression)FABP5P3
Human Protein AtlasENSG00000241735-FABP5P3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MUU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MUU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MUU1
Splice isoforms : SwissVarA8MUU1
PhosPhoSitePlusA8MUU1
Domains : Interpro (EBI)Calycin    Calycin-like    Fatty_acid-bd    iLBP    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)FABP5P3
DMDM Disease mutations220832
Blocks (Seattle)FABP5P3
SuperfamilyA8MUU1
Human Protein Atlas [tissue]ENSG00000241735-FABP5P3 [tissue]
Peptide AtlasA8MUU1
IPIIPI00869087   
Protein Interaction databases
DIP (DOE-UCLA)A8MUU1
IntAct (EBI)A8MUU1
FunCoupENSG00000241735
BioGRIDFABP5P3
STRING (EMBL)FABP5P3
ZODIACFABP5P3
Ontologies - Pathways
QuickGOA8MUU1
Ontology : AmiGOtransporter activity  transport  lipid binding  
Ontology : EGO-EBItransporter activity  transport  lipid binding  
NDEx NetworkFABP5P3
Atlas of Cancer Signalling NetworkFABP5P3
Wikipedia pathwaysFABP5P3
Orthology - Evolution
OrthoDB220832
GeneTree (enSembl)ENSG00000241735
Phylogenetic Trees/Animal Genes : TreeFamFABP5P3
HOVERGENA8MUU1
HOGENOMA8MUU1
Homologs : HomoloGeneFABP5P3
Homology/Alignments : Family Browser (UCSC)FABP5P3
Gene fusions - Rearrangements
Tumor Fusion PortalFABP5P3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFABP5P3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FABP5P3
dbVarFABP5P3
ClinVarFABP5P3
1000_GenomesFABP5P3 
Exome Variant ServerFABP5P3
ExAC (Exome Aggregation Consortium)ENSG00000241735
GNOMAD BrowserENSG00000241735
Genetic variants : HAPMAP220832
Genomic Variants (DGV)FABP5P3 [DGVbeta]
DECIPHERFABP5P3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFABP5P3 
Mutations
ICGC Data PortalFABP5P3 
TCGA Data PortalFABP5P3 
Broad Tumor PortalFABP5P3
OASIS PortalFABP5P3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFABP5P3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FABP5P3
DgiDB (Drug Gene Interaction Database)FABP5P3
DoCM (Curated mutations)FABP5P3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FABP5P3 (select a term)
intoGenFABP5P3
Cancer3DFABP5P3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFABP5P3
MedgenFABP5P3
Genetic Testing Registry FABP5P3
NextProtA8MUU1 [Medical]
TSGene220832
GENETestsFABP5P3
Target ValidationFABP5P3
Huge Navigator FABP5P3 [HugePedia]
snp3D : Map Gene to Disease220832
BioCentury BCIQFABP5P3
ClinGenFABP5P3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220832
Chemical/Pharm GKB GenePA134876256
Clinical trialFABP5P3
Miscellaneous
canSAR (ICR)FABP5P3 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFABP5P3
EVEXFABP5P3
GoPubMedFABP5P3
iHOPFABP5P3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:16:02 CET 2017

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