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FABP6 (fatty acid binding protein 6)

Identity

Alias_namesfatty acid binding protein 6
Alias_symbol (synonym)I-15P
ILLBP
I-BAP
ILBP3
I-BABP
ILBP
I-BALB
Other alias
HGNC (Hugo) FABP6
LocusID (NCBI) 2172
Atlas_Id 49863
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 159626048 and ends at 159665729 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FABP6 (5q33.3) / CRK (17p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FABP6   3561
Cards
Entrez_Gene (NCBI)FABP6  2172  fatty acid binding protein 6
AliasesI-15P; I-BABP; I-BALB; I-BAP; 
ILBP; ILBP3; ILLBP
GeneCards (Weizmann)FABP6
Ensembl hg19 (Hinxton)ENSG00000170231 [Gene_View]  chr5:159626048-159665729 [Contig_View]  FABP6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170231 [Gene_View]  chr5:159626048-159665729 [Contig_View]  FABP6 [Vega]
ICGC DataPortalENSG00000170231
TCGA cBioPortalFABP6
AceView (NCBI)FABP6
Genatlas (Paris)FABP6
WikiGenes2172
SOURCE (Princeton)FABP6
Genetics Home Reference (NIH)FABP6
Genomic and cartography
GoldenPath hg19 (UCSC)FABP6  -     chr5:159626048-159665729 +  5q33.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FABP6  -     5q33.3   [Description]    (hg38-Dec_2013)
EnsemblFABP6 - 5q33.3 [CytoView hg19]  FABP6 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBIFABP6 [Mapview hg19]  FABP6 [Mapview hg38]
OMIM600422   
Gene and transcription
Genbank (Entrez)AI208231 BC022489 DQ132786 HQ448339 U19869
RefSeq transcript (Entrez)NM_001040442 NM_001130958 NM_001445
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_029500 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)FABP6
Cluster EST : UnigeneHs.519719 [ NCBI ]
CGAP (NCI)Hs.519719
Alternative Splicing GalleryENSG00000170231
Gene ExpressionFABP6 [ NCBI-GEO ]   FABP6 [ EBI - ARRAY_EXPRESS ]   FABP6 [ SEEK ]   FABP6 [ MEM ]
Gene Expression Viewer (FireBrowse)FABP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2172
GTEX Portal (Tissue expression)FABP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51161   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51161  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51161
Splice isoforms : SwissVarP51161
PhosPhoSitePlusP51161
Domaine pattern : Prosite (Expaxy)FABP (PS00214)   
Domains : Interpro (EBI)Calycin    Calycin-like    Fatty_acid-bd    Gastrotropin    iLBP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FABP6
DMDM Disease mutations2172
Blocks (Seattle)FABP6
PDB (SRS)1O1U    1O1V    2MM3   
PDB (PDBSum)1O1U    1O1V    2MM3   
PDB (IMB)1O1U    1O1V    2MM3   
PDB (RSDB)1O1U    1O1V    2MM3   
Structural Biology KnowledgeBase1O1U    1O1V    2MM3   
SCOP (Structural Classification of Proteins)1O1U    1O1V    2MM3   
CATH (Classification of proteins structures)1O1U    1O1V    2MM3   
SuperfamilyP51161
Human Protein AtlasENSG00000170231
Peptide AtlasP51161
HPRD02689
IPIIPI00163119   IPI00744927   IPI00982614   
Protein Interaction databases
DIP (DOE-UCLA)P51161
IntAct (EBI)P51161
FunCoupENSG00000170231
BioGRIDFABP6
STRING (EMBL)FABP6
ZODIACFABP6
Ontologies - Pathways
QuickGOP51161
Ontology : AmiGOtransporter activity  cytoplasm  cytosol  lipid metabolic process  bile acid metabolic process  negative regulation of cell proliferation  lipid binding  bile acid and bile salt transport  triglyceride catabolic process  bile acid binding  
Ontology : EGO-EBItransporter activity  cytoplasm  cytosol  lipid metabolic process  bile acid metabolic process  negative regulation of cell proliferation  lipid binding  bile acid and bile salt transport  triglyceride catabolic process  bile acid binding  
Pathways : BIOCARTAFXR and LXR Regulation of Cholesterol Metabolism [Genes]   
Pathways : KEGGPPAR signaling pathway   
NDEx NetworkFABP6
Atlas of Cancer Signalling NetworkFABP6
Wikipedia pathwaysFABP6
Orthology - Evolution
OrthoDB2172
GeneTree (enSembl)ENSG00000170231
Phylogenetic Trees/Animal Genes : TreeFamFABP6
HOVERGENP51161
HOGENOMP51161
Homologs : HomoloGeneFABP6
Homology/Alignments : Family Browser (UCSC)FABP6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFABP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FABP6
dbVarFABP6
ClinVarFABP6
1000_GenomesFABP6 
Exome Variant ServerFABP6
ExAC (Exome Aggregation Consortium)FABP6 (select the gene name)
Genetic variants : HAPMAP2172
Genomic Variants (DGV)FABP6 [DGVbeta]
DECIPHER (Syndromes)5:159626048-159665729  ENSG00000170231
CONAN: Copy Number AnalysisFABP6 
Mutations
ICGC Data PortalFABP6 
TCGA Data PortalFABP6 
Broad Tumor PortalFABP6
OASIS PortalFABP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFABP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFABP6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FABP6
DgiDB (Drug Gene Interaction Database)FABP6
DoCM (Curated mutations)FABP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FABP6 (select a term)
intoGenFABP6
Cancer3DFABP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600422   
Orphanet
MedgenFABP6
Genetic Testing Registry FABP6
NextProtP51161 [Medical]
TSGene2172
GENETestsFABP6
Huge Navigator FABP6 [HugePedia]
snp3D : Map Gene to Disease2172
BioCentury BCIQFABP6
ClinGenFABP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2172
Chemical/Pharm GKB GenePA27962
Clinical trialFABP6
Miscellaneous
canSAR (ICR)FABP6 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFABP6
EVEXFABP6
GoPubMedFABP6
iHOPFABP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:05:18 CET 2017

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