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FABP6 (fatty acid binding protein 6)

Identity

Alias (NCBI)I-15P
I-BABP
I-BALB
I-BAP
ILBP
ILBP3
ILLBP
HGNC (Hugo) FABP6
HGNC Alias symbI-15P
ILLBP
I-BAP
ILBP3
I-BABP
ILBP
I-BALB
HGNC Alias nameilleal lipid-binding protein
 ileal bile acid binding protein
 gastrotropin
HGNC Previous namefatty acid binding protein 6, ileal
LocusID (NCBI) 2172
Atlas_Id 49863
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 160229506 and ends at 160238716 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FABP6 (5q33.3)::CRK (17p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FABP6   3561
Cards
Entrez_Gene (NCBI)FABP6    fatty acid binding protein 6
AliasesI-15P; I-BABP; I-BALB; I-BAP; 
ILBP; ILBP3; ILLBP
GeneCards (Weizmann)FABP6
Ensembl hg19 (Hinxton)ENSG00000170231 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170231 [Gene_View]  ENSG00000170231 [Sequence]  chr5:160229506-160238716 [Contig_View]  FABP6 [Vega]
ICGC DataPortalENSG00000170231
TCGA cBioPortalFABP6
AceView (NCBI)FABP6
Genatlas (Paris)FABP6
SOURCE (Princeton)FABP6
Genetics Home Reference (NIH)FABP6
Genomic and cartography
GoldenPath hg38 (UCSC)FABP6  -     chr5:160229506-160238716 +  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FABP6  -     5q33.3   [Description]    (hg19-Feb_2009)
GoldenPathFABP6 - 5q33.3 [CytoView hg19]  FABP6 - 5q33.3 [CytoView hg38]
ImmunoBaseENSG00000170231
Genome Data Viewer NCBIFABP6 [Mapview hg19]  
OMIM600422   
Gene and transcription
Genbank (Entrez)AI208231 BC022489 DQ132786 U19869 X90908
RefSeq transcript (Entrez)NM_001040442 NM_001130958 NM_001445
Consensus coding sequences : CCDS (NCBI)FABP6
Gene ExpressionFABP6 [ NCBI-GEO ]   FABP6 [ EBI - ARRAY_EXPRESS ]   FABP6 [ SEEK ]   FABP6 [ MEM ]
Gene Expression Viewer (FireBrowse)FABP6 [ Firebrowse - Broad ]
GenevisibleExpression of FABP6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2172
GTEX Portal (Tissue expression)FABP6
Human Protein AtlasENSG00000170231-FABP6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51161   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51161  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51161
PhosPhoSitePlusP51161
Domaine pattern : Prosite (Expaxy)FABP (PS00214)   
Domains : Interpro (EBI)Calycin    Fatty_acid-bd    ILBP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FABP6
PDB (RSDB)1O1U    1O1V    2MM3    5L8I    5L8N    5L8O   
PDB Europe1O1U    1O1V    2MM3    5L8I    5L8N    5L8O   
PDB (PDBSum)1O1U    1O1V    2MM3    5L8I    5L8N    5L8O   
PDB (IMB)1O1U    1O1V    2MM3    5L8I    5L8N    5L8O   
Structural Biology KnowledgeBase1O1U    1O1V    2MM3    5L8I    5L8N    5L8O   
SCOP (Structural Classification of Proteins)1O1U    1O1V    2MM3    5L8I    5L8N    5L8O   
CATH (Classification of proteins structures)1O1U    1O1V    2MM3    5L8I    5L8N    5L8O   
SuperfamilyP51161
AlphaFold pdb e-kbP51161   
Human Protein Atlas [tissue]ENSG00000170231-FABP6 [tissue]
HPRD02689
Protein Interaction databases
DIP (DOE-UCLA)P51161
IntAct (EBI)P51161
BioGRIDFABP6
STRING (EMBL)FABP6
ZODIACFABP6
Ontologies - Pathways
QuickGOP51161
Ontology : AmiGOfatty acid binding  nucleus  cytoplasm  cytosol  cytosol  lipid metabolic process  negative regulation of cell population proliferation  lipid binding  fatty acid transport  membrane  
Ontology : EGO-EBIfatty acid binding  nucleus  cytoplasm  cytosol  cytosol  lipid metabolic process  negative regulation of cell population proliferation  lipid binding  fatty acid transport  membrane  
Pathways : BIOCARTABIOCARTA_FXRPATHWAY   
Pathways : KEGGKEGG_PPAR_SIGNALING   
NDEx NetworkFABP6
Atlas of Cancer Signalling NetworkFABP6
Wikipedia pathwaysFABP6
Orthology - Evolution
OrthoDB2172
GeneTree (enSembl)ENSG00000170231
Phylogenetic Trees/Animal Genes : TreeFamFABP6
Homologs : HomoloGeneFABP6
Homology/Alignments : Family Browser (UCSC)FABP6
Gene fusions - Rearrangements
Fusion : QuiverFABP6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFABP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FABP6
dbVarFABP6
ClinVarFABP6
MonarchFABP6
1000_GenomesFABP6 
Exome Variant ServerFABP6
GNOMAD BrowserENSG00000170231
Varsome BrowserFABP6
ACMGFABP6 variants
VarityP51161
Genomic Variants (DGV)FABP6 [DGVbeta]
DECIPHERFABP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFABP6 
Mutations
ICGC Data PortalFABP6 
TCGA Data PortalFABP6 
Broad Tumor PortalFABP6
OASIS PortalFABP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFABP6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFABP6
Mutations and Diseases : HGMDFABP6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFABP6
DgiDB (Drug Gene Interaction Database)FABP6
DoCM (Curated mutations)FABP6
CIViC (Clinical Interpretations of Variants in Cancer)FABP6
Cancer3DFABP6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600422   
Orphanet
DisGeNETFABP6
MedgenFABP6
Genetic Testing Registry FABP6
NextProtP51161 [Medical]
GENETestsFABP6
Target ValidationFABP6
Huge Navigator FABP6 [HugePedia]
ClinGenFABP6
Clinical trials, drugs, therapy
MyCancerGenomeFABP6
Protein Interactions : CTDFABP6
Pharm GKB GenePA27962
PharosP51161
Clinical trialFABP6
Miscellaneous
canSAR (ICR)FABP6
HarmonizomeFABP6
ARCHS4FABP6
DataMed IndexFABP6
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFABP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:32:51 CET 2022

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