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FABP9 (fatty acid binding protein 9)

Identity

Alias_symbol (synonym)PERF
T-FABP
PERF15
Other aliasTLBP
HGNC (Hugo) FABP9
LocusID (NCBI) 646480
Atlas_Id 62970
Location 8q21.13  [Link to chromosome band 8q21]
Location_base_pair Starts at 81458383 and ends at 81461523 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FABP9   3563
Cards
Entrez_Gene (NCBI)FABP9  646480  fatty acid binding protein 9
AliasesPERF; PERF15; T-FABP; TLBP
GeneCards (Weizmann)FABP9
Ensembl hg19 (Hinxton)ENSG00000205186 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205186 [Gene_View]  chr8:81458383-81461523 [Contig_View]  FABP9 [Vega]
ICGC DataPortalENSG00000205186
TCGA cBioPortalFABP9
AceView (NCBI)FABP9
Genatlas (Paris)FABP9
WikiGenes646480
SOURCE (Princeton)FABP9
Genetics Home Reference (NIH)FABP9
Genomic and cartography
GoldenPath hg38 (UCSC)FABP9  -     chr8:81458383-81461523 -  8q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FABP9  -     8q21.13   [Description]    (hg19-Feb_2009)
EnsemblFABP9 - 8q21.13 [CytoView hg19]  FABP9 - 8q21.13 [CytoView hg38]
Mapping of homologs : NCBIFABP9 [Mapview hg19]  FABP9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC152780
RefSeq transcript (Entrez)NM_001080526
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FABP9
Cluster EST : UnigeneHs.653176 [ NCBI ]
CGAP (NCI)Hs.653176
Alternative Splicing GalleryENSG00000205186
Gene ExpressionFABP9 [ NCBI-GEO ]   FABP9 [ EBI - ARRAY_EXPRESS ]   FABP9 [ SEEK ]   FABP9 [ MEM ]
Gene Expression Viewer (FireBrowse)FABP9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646480
GTEX Portal (Tissue expression)FABP9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0Z7S8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0Z7S8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0Z7S8
Splice isoforms : SwissVarQ0Z7S8
PhosPhoSitePlusQ0Z7S8
Domaine pattern : Prosite (Expaxy)FABP (PS00214)   
Domains : Interpro (EBI)Calycin    Calycin-like    Fatty_acid-bd    iLBP    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)FABP9
DMDM Disease mutations646480
Blocks (Seattle)FABP9
PDB (SRS)4A60   
PDB (PDBSum)4A60   
PDB (IMB)4A60   
PDB (RSDB)4A60   
Structural Biology KnowledgeBase4A60   
SCOP (Structural Classification of Proteins)4A60   
CATH (Classification of proteins structures)4A60   
SuperfamilyQ0Z7S8
Human Protein AtlasENSG00000205186
Peptide AtlasQ0Z7S8
IPIIPI00741716   
Protein Interaction databases
DIP (DOE-UCLA)Q0Z7S8
IntAct (EBI)Q0Z7S8
FunCoupENSG00000205186
BioGRIDFABP9
STRING (EMBL)FABP9
ZODIACFABP9
Ontologies - Pathways
QuickGOQ0Z7S8
Ontology : AmiGOacrosomal vesicle  acrosome assembly  transporter activity  cytosol  transport  lipid binding  triglyceride catabolic process  
Ontology : EGO-EBIacrosomal vesicle  acrosome assembly  transporter activity  cytosol  transport  lipid binding  triglyceride catabolic process  
NDEx NetworkFABP9
Atlas of Cancer Signalling NetworkFABP9
Wikipedia pathwaysFABP9
Orthology - Evolution
OrthoDB646480
GeneTree (enSembl)ENSG00000205186
Phylogenetic Trees/Animal Genes : TreeFamFABP9
HOVERGENQ0Z7S8
HOGENOMQ0Z7S8
Homologs : HomoloGeneFABP9
Homology/Alignments : Family Browser (UCSC)FABP9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFABP9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FABP9
dbVarFABP9
ClinVarFABP9
1000_GenomesFABP9 
Exome Variant ServerFABP9
ExAC (Exome Aggregation Consortium)FABP9 (select the gene name)
Genetic variants : HAPMAP646480
Genomic Variants (DGV)FABP9 [DGVbeta]
DECIPHERFABP9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFABP9 
Mutations
ICGC Data PortalFABP9 
TCGA Data PortalFABP9 
Broad Tumor PortalFABP9
OASIS PortalFABP9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFABP9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFABP9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FABP9
DgiDB (Drug Gene Interaction Database)FABP9
DoCM (Curated mutations)FABP9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FABP9 (select a term)
intoGenFABP9
Cancer3DFABP9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFABP9
Genetic Testing Registry FABP9
NextProtQ0Z7S8 [Medical]
TSGene646480
GENETestsFABP9
Target ValidationFABP9
Huge Navigator FABP9 [HugePedia]
snp3D : Map Gene to Disease646480
BioCentury BCIQFABP9
ClinGenFABP9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646480
Chemical/Pharm GKB GenePA27964
Clinical trialFABP9
Miscellaneous
canSAR (ICR)FABP9 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFABP9
EVEXFABP9
GoPubMedFABP9
iHOPFABP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:29 CEST 2017

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