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FADS6 (fatty acid desaturase 6)

Identity

Alias_namesfatty acid desaturase domain family, member 6
Other aliasFP18279
HGNC (Hugo) FADS6
LocusID (NCBI) 283985
Atlas_Id 62973
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74877311 and ends at 74893811 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FADS6   30459
Cards
Entrez_Gene (NCBI)FADS6  283985  fatty acid desaturase 6
AliasesFP18279
GeneCards (Weizmann)FADS6
Ensembl hg19 (Hinxton)ENSG00000172782 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172782 [Gene_View]  chr17:74877311-74893811 [Contig_View]  FADS6 [Vega]
ICGC DataPortalENSG00000172782
TCGA cBioPortalFADS6
AceView (NCBI)FADS6
Genatlas (Paris)FADS6
WikiGenes283985
SOURCE (Princeton)FADS6
Genetics Home Reference (NIH)FADS6
Genomic and cartography
GoldenPath hg38 (UCSC)FADS6  -     chr17:74877311-74893811 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FADS6  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblFADS6 - 17q25.1 [CytoView hg19]  FADS6 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIFADS6 [Mapview hg19]  FADS6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094411 AK293720 AY203929 BC117230 DA267830
RefSeq transcript (Entrez)NM_178128
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FADS6
Cluster EST : UnigeneHs.448845 [ NCBI ]
CGAP (NCI)Hs.448845
Alternative Splicing GalleryENSG00000172782
Gene ExpressionFADS6 [ NCBI-GEO ]   FADS6 [ EBI - ARRAY_EXPRESS ]   FADS6 [ SEEK ]   FADS6 [ MEM ]
Gene Expression Viewer (FireBrowse)FADS6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283985
GTEX Portal (Tissue expression)FADS6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9I5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9I5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9I5
Splice isoforms : SwissVarQ8N9I5
PhosPhoSitePlusQ8N9I5
Domains : Interpro (EBI)FA_desaturase_dom   
Domain families : Pfam (Sanger)FA_desaturase (PF00487)   
Domain families : Pfam (NCBI)pfam00487   
Conserved Domain (NCBI)FADS6
DMDM Disease mutations283985
Blocks (Seattle)FADS6
SuperfamilyQ8N9I5
Human Protein AtlasENSG00000172782
Peptide AtlasQ8N9I5
HPRD13285
IPIIPI00167733   IPI00895913   IPI00909072   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9I5
IntAct (EBI)Q8N9I5
FunCoupENSG00000172782
BioGRIDFADS6
STRING (EMBL)FADS6
ZODIACFADS6
Ontologies - Pathways
QuickGOQ8N9I5
Ontology : AmiGOfatty acid biosynthetic process  integral component of membrane  oxidoreductase activity  oxidation-reduction process  
Ontology : EGO-EBIfatty acid biosynthetic process  integral component of membrane  oxidoreductase activity  oxidation-reduction process  
NDEx NetworkFADS6
Atlas of Cancer Signalling NetworkFADS6
Wikipedia pathwaysFADS6
Orthology - Evolution
OrthoDB283985
GeneTree (enSembl)ENSG00000172782
Phylogenetic Trees/Animal Genes : TreeFamFADS6
HOVERGENQ8N9I5
HOGENOMQ8N9I5
Homologs : HomoloGeneFADS6
Homology/Alignments : Family Browser (UCSC)FADS6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFADS6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FADS6
dbVarFADS6
ClinVarFADS6
1000_GenomesFADS6 
Exome Variant ServerFADS6
ExAC (Exome Aggregation Consortium)FADS6 (select the gene name)
Genetic variants : HAPMAP283985
Genomic Variants (DGV)FADS6 [DGVbeta]
DECIPHERFADS6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFADS6 
Mutations
ICGC Data PortalFADS6 
TCGA Data PortalFADS6 
Broad Tumor PortalFADS6
OASIS PortalFADS6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFADS6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFADS6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FADS6
DgiDB (Drug Gene Interaction Database)FADS6
DoCM (Curated mutations)FADS6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FADS6 (select a term)
intoGenFADS6
Cancer3DFADS6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFADS6
Genetic Testing Registry FADS6
NextProtQ8N9I5 [Medical]
TSGene283985
GENETestsFADS6
Target ValidationFADS6
Huge Navigator FADS6 [HugePedia]
snp3D : Map Gene to Disease283985
BioCentury BCIQFADS6
ClinGenFADS6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283985
Chemical/Pharm GKB GenePA134883572
Clinical trialFADS6
Miscellaneous
canSAR (ICR)FADS6 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFADS6
EVEXFADS6
GoPubMedFADS6
iHOPFADS6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:47:39 CEST 2017

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