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FAF1 (Fas (TNFRSF6) associated factor 1)

Identity

Other namesHFAF1s
UBXD12
UBXN3A
hFAF1
HGNC (Hugo) FAF1
LocusID (NCBI) 11124
Location 1p32.3
Location_base_pair Starts at 50906935 and ends at 51425936 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FAF1   3578
Entrez_Gene (NCBI)FAF1  11124  Fas (TNFRSF6) associated factor 1
Cards
GeneCards (Weizmann)FAF1
Ensembl (Hinxton) [Gene_View]  chr1:50906935-51425936 [Contig_View]  FAF1 [Vega]
AceView (NCBI)FAF1
Genatlas (Paris)FAF1
SOURCE (Stanford)NM_007051 NM_131917
Genomic and cartography
GoldenPath (UCSC)FAF1  -  1p32.3   chr1:50906935-51425936 -  1p32.3   [Description]    (hg19-Feb_2009)
EnsemblFAF1 - 1p32.3 [CytoView]
Mapping of homologs : NCBIFAF1 [Mapview]
OMIM604460   
Gene and transcription
Genbank (Entrez)AF094700 AF106798 AF132938 AF136173 AJ271408
RefSeq transcript (SRS)NM_007051 NM_131917
RefSeq transcript (Entrez)NM_007051 NM_131917
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NT_032977 NW_001838579 NW_004077990
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_032977 NW_001838579 NW_004077990
Consensus coding sequences : CCDS (NCBI)FAF1
Cluster EST : UnigeneHs.530402 [ SRS ] Hs.530402 [ NCBI ]
CGAP (NCI)Hs.530402
Alternative Splicing : Fast-db (Paris)GSHG0002091
Gene ExpressionFAF1 [ NCBI-GEO ]   FAF1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UNN5 (SRS) Q9UNN5 (Uniprot)
NextProtQ9UNN5
With graphics : InterProQ9UNN5
Splice isoforms : SwissVarQ9UNN5(Swissvar)
Domaine pattern : Prosite (SRS)UBA (PS50030)    UBX (PS50033)   
Domaine pattern : Prosite (Expaxy)UBA (PS50030)    UBX (PS50033)   
Domains : Interpro (SRS)UAS    UBX   
Domains : Interpro (EBI)UAS    UBX   
Related proteins : CluSTrQ9UNN5
Domain families : Pfam (SRS)UBX (PF00789)   
Domain families : Pfam (Sanger)UBX (PF00789)   
Domain families : Pfam (NCBI)pfam00789   
Domain families : Smart (EMBL)UAS (SM00594)  UBX (SM00166)  
DMDM11124
Blocks (Seattle)Q9UNN5
PDB (SRS)1H8C    2DZM    2EC4    3E21    3QC8    3QCA    3QQ8    3QWZ    3QX1    3R3M   
PDB (PDBSum)1H8C    2DZM    2EC4    3E21    3QC8    3QCA    3QQ8    3QWZ    3QX1    3R3M   
PDB (IMB)1H8C    2DZM    2EC4    3E21    3QC8    3QCA    3QQ8    3QWZ    3QX1    3R3M   
PDB (RSDB)1H8C    2DZM    2EC4    3E21    3QC8    3QCA    3QQ8    3QWZ    3QX1    3R3M   
HPRD05124
IPIIPI00070643   IPI00219265   IPI01014422   IPI01018870   IPI00844032   
Protein Interaction databases
DIP (DOE-UCLA)Q9UNN5
IntAct (EBI)Q9UNN5
REACTOMEFAF1
Protein Interaction Database11124
BioGRIDFAF1
InParanoidQ9UNN5
Interologous Interaction database Q9UNN5
IntegromeDBFAF1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FAF1
SNP (GeneSNP Utah)FAF1
SNP : HGBaseFAF1
Genetic variants : HAPMAPFAF1
Somatic Mutations in Cancer : COSMICFAF1 
CONAN: Copy Number AnalysisFAF1 
Mutations and Diseases : HGMDFAF1
OMIM604460   
GENETests604460   
Disease Genetic AssociationFAF1
Huge Navigator FAF1 [HugePedia]  FAF1 [HugeCancerGEM]
Genomic VariantsFAF1  FAF1 [DGVbeta]
ClinVarFAF1
snp3D : Map Gene to Disease11124
General knowledge
Homologs : HomoloGeneFAF1
Homology/Alignments : Family Browser (UCSC)FAF1
Phylogenetic Trees/Animal Genes : TreeFamFAF1
Chemical/Protein Interactions : CTD11124
Chemical/Pharm GKB GenePA27976
Clinical trialFAF1
Ontology : AmiGOprotein binding  nucleus  nuclear envelope  cytosol  apoptotic process  cytoplasmic sequestering of NF-kappaB  cell death  protein kinase regulator activity  protein kinase binding  protein domain specific binding  regulation of cell adhesion  heat shock protein binding  CD95 death-inducing signaling complex  positive regulation of protein complex assembly  ubiquitin protein ligase binding  Cdc48p-Npl4p-Ufd1p AAA ATPase complex  regulation of protein catabolic process  positive regulation of apoptotic process  ubiquitin binding  proteasomal ubiquitin-dependent protein catabolic process  regulation of protein kinase activity  perinuclear region of cytoplasm  NF-kappaB binding  
Ontology : EGO-EBIprotein binding  nucleus  nuclear envelope  cytosol  apoptotic process  cytoplasmic sequestering of NF-kappaB  cell death  protein kinase regulator activity  protein kinase binding  protein domain specific binding  regulation of cell adhesion  heat shock protein binding  CD95 death-inducing signaling complex  positive regulation of protein complex assembly  ubiquitin protein ligase binding  Cdc48p-Npl4p-Ufd1p AAA ATPase complex  regulation of protein catabolic process  positive regulation of apoptotic process  ubiquitin binding  proteasomal ubiquitin-dependent protein catabolic process  regulation of protein kinase activity  perinuclear region of cytoplasm  NF-kappaB binding  
Pathways : BIOCARTAFAS signaling pathway ( CD95 ) [Genes]   
Other databases
Probes
Litterature
PubMed75 Pubmed reference(s) in Entrez
PubGeneFAF1
iHOPFAF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:57:50 CEST 2013
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