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FAHD2A (fumarylacetoacetate hydrolase domain containing 2A)

Identity

Alias_symbol (synonym)CGI-105
Other alias
HGNC (Hugo) FAHD2A
LocusID (NCBI) 51011
Atlas_Id 62977
Location 2q11.1  [Link to chromosome band 2q11]
Location_base_pair Starts at 95402700 and ends at 95413131 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAHD2A   24252
Cards
Entrez_Gene (NCBI)FAHD2A  51011  fumarylacetoacetate hydrolase domain containing 2A
AliasesCGI-105
GeneCards (Weizmann)FAHD2A
Ensembl hg19 (Hinxton)ENSG00000115042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115042 [Gene_View]  chr2:95402700-95413131 [Contig_View]  FAHD2A [Vega]
ICGC DataPortalENSG00000115042
TCGA cBioPortalFAHD2A
AceView (NCBI)FAHD2A
Genatlas (Paris)FAHD2A
WikiGenes51011
SOURCE (Princeton)FAHD2A
Genetics Home Reference (NIH)FAHD2A
Genomic and cartography
GoldenPath hg38 (UCSC)FAHD2A  -     chr2:95402700-95413131 +  2q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAHD2A  -     2q11.1   [Description]    (hg19-Feb_2009)
EnsemblFAHD2A - 2q11.1 [CytoView hg19]  FAHD2A - 2q11.1 [CytoView hg38]
Mapping of homologs : NCBIFAHD2A [Mapview hg19]  FAHD2A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA311902 AF151863 AK092980 BC009403 BC110911
RefSeq transcript (Entrez)NM_016044
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAHD2A
Cluster EST : UnigeneHs.546387 [ NCBI ]
CGAP (NCI)Hs.546387
Alternative Splicing GalleryENSG00000115042
Gene ExpressionFAHD2A [ NCBI-GEO ]   FAHD2A [ EBI - ARRAY_EXPRESS ]   FAHD2A [ SEEK ]   FAHD2A [ MEM ]
Gene Expression Viewer (FireBrowse)FAHD2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51011
GTEX Portal (Tissue expression)FAHD2A
Human Protein AtlasENSG00000115042-FAHD2A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GK7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GK7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GK7
Splice isoforms : SwissVarQ96GK7
PhosPhoSitePlusQ96GK7
Domains : Interpro (EBI)Fumarylacetoacetase_C-rel   
Domain families : Pfam (Sanger)FAA_hydrolase (PF01557)   
Domain families : Pfam (NCBI)pfam01557   
Conserved Domain (NCBI)FAHD2A
DMDM Disease mutations51011
Blocks (Seattle)FAHD2A
SuperfamilyQ96GK7
Human Protein Atlas [tissue]ENSG00000115042-FAHD2A [tissue]
Peptide AtlasQ96GK7
HPRD13287
IPIIPI00329742   IPI00910111   IPI00927122   
Protein Interaction databases
DIP (DOE-UCLA)Q96GK7
IntAct (EBI)Q96GK7
FunCoupENSG00000115042
BioGRIDFAHD2A
STRING (EMBL)FAHD2A
ZODIACFAHD2A
Ontologies - Pathways
QuickGOQ96GK7
Ontology : AmiGOmetabolic process  hydrolase activity  metal ion binding  
Ontology : EGO-EBImetabolic process  hydrolase activity  metal ion binding  
NDEx NetworkFAHD2A
Atlas of Cancer Signalling NetworkFAHD2A
Wikipedia pathwaysFAHD2A
Orthology - Evolution
OrthoDB51011
GeneTree (enSembl)ENSG00000115042
Phylogenetic Trees/Animal Genes : TreeFamFAHD2A
HOVERGENQ96GK7
HOGENOMQ96GK7
Homologs : HomoloGeneFAHD2A
Homology/Alignments : Family Browser (UCSC)FAHD2A
Gene fusions - Rearrangements
Tumor Fusion PortalFAHD2A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAHD2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAHD2A
dbVarFAHD2A
ClinVarFAHD2A
1000_GenomesFAHD2A 
Exome Variant ServerFAHD2A
ExAC (Exome Aggregation Consortium)ENSG00000115042
GNOMAD BrowserENSG00000115042
Genetic variants : HAPMAP51011
Genomic Variants (DGV)FAHD2A [DGVbeta]
DECIPHERFAHD2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAHD2A 
Mutations
ICGC Data PortalFAHD2A 
TCGA Data PortalFAHD2A 
Broad Tumor PortalFAHD2A
OASIS PortalFAHD2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAHD2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAHD2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch FAHD2A
DgiDB (Drug Gene Interaction Database)FAHD2A
DoCM (Curated mutations)FAHD2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAHD2A (select a term)
intoGenFAHD2A
Cancer3DFAHD2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAHD2A
MedgenFAHD2A
Genetic Testing Registry FAHD2A
NextProtQ96GK7 [Medical]
TSGene51011
GENETestsFAHD2A
Target ValidationFAHD2A
Huge Navigator FAHD2A [HugePedia]
snp3D : Map Gene to Disease51011
BioCentury BCIQFAHD2A
ClinGenFAHD2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51011
Chemical/Pharm GKB GenePA134860971
Clinical trialFAHD2A
Miscellaneous
canSAR (ICR)FAHD2A (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAHD2A
EVEXFAHD2A
GoPubMedFAHD2A
iHOPFAHD2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:04:28 CET 2017

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