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FAHD2B (fumarylacetoacetate hydrolase domain containing 2B)

Identity

Alias_symbol (synonym)DKFZp434N062
Other alias-
HGNC (Hugo) FAHD2B
LocusID (NCBI) 151313
Atlas_Id 62978
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 97083586 and ends at 97094882 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAHD2B (2q11.2) / SEPW1 (19q13.33)ZNF251 (8q24.3) / FAHD2B (2q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAHD2B   25318
Cards
Entrez_Gene (NCBI)FAHD2B  151313  fumarylacetoacetate hydrolase domain containing 2B
Aliases
GeneCards (Weizmann)FAHD2B
Ensembl hg19 (Hinxton)ENSG00000144199 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144199 [Gene_View]  chr2:97083586-97094882 [Contig_View]  FAHD2B [Vega]
ICGC DataPortalENSG00000144199
TCGA cBioPortalFAHD2B
AceView (NCBI)FAHD2B
Genatlas (Paris)FAHD2B
WikiGenes151313
SOURCE (Princeton)FAHD2B
Genetics Home Reference (NIH)FAHD2B
Genomic and cartography
GoldenPath hg38 (UCSC)FAHD2B  -     chr2:97083586-97094882 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAHD2B  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblFAHD2B - 2q11.2 [CytoView hg19]  FAHD2B - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBIFAHD2B [Mapview hg19]  FAHD2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK295056 AL833869 BC064511 BI547630 BQ017817
RefSeq transcript (Entrez)NM_001320848 NM_001320849 NM_199336
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAHD2B
Cluster EST : UnigeneHs.720108 [ NCBI ]
CGAP (NCI)Hs.720108
Alternative Splicing GalleryENSG00000144199
Gene ExpressionFAHD2B [ NCBI-GEO ]   FAHD2B [ EBI - ARRAY_EXPRESS ]   FAHD2B [ SEEK ]   FAHD2B [ MEM ]
Gene Expression Viewer (FireBrowse)FAHD2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151313
GTEX Portal (Tissue expression)FAHD2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P2I3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P2I3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P2I3
Splice isoforms : SwissVarQ6P2I3
PhosPhoSitePlusQ6P2I3
Domains : Interpro (EBI)Fumarylacetoacetase_C-rel   
Domain families : Pfam (Sanger)FAA_hydrolase (PF01557)   
Domain families : Pfam (NCBI)pfam01557   
Conserved Domain (NCBI)FAHD2B
DMDM Disease mutations151313
Blocks (Seattle)FAHD2B
SuperfamilyQ6P2I3
Human Protein AtlasENSG00000144199
Peptide AtlasQ6P2I3
HPRD13198
IPIIPI00301994   IPI00955849   
Protein Interaction databases
DIP (DOE-UCLA)Q6P2I3
IntAct (EBI)Q6P2I3
FunCoupENSG00000144199
BioGRIDFAHD2B
STRING (EMBL)FAHD2B
ZODIACFAHD2B
Ontologies - Pathways
QuickGOQ6P2I3
Ontology : AmiGOmetabolic process  hydrolase activity  metal ion binding  
Ontology : EGO-EBImetabolic process  hydrolase activity  metal ion binding  
NDEx NetworkFAHD2B
Atlas of Cancer Signalling NetworkFAHD2B
Wikipedia pathwaysFAHD2B
Orthology - Evolution
OrthoDB151313
GeneTree (enSembl)ENSG00000144199
Phylogenetic Trees/Animal Genes : TreeFamFAHD2B
HOVERGENQ6P2I3
HOGENOMQ6P2I3
Homologs : HomoloGeneFAHD2B
Homology/Alignments : Family Browser (UCSC)FAHD2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAHD2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAHD2B
dbVarFAHD2B
ClinVarFAHD2B
1000_GenomesFAHD2B 
Exome Variant ServerFAHD2B
ExAC (Exome Aggregation Consortium)FAHD2B (select the gene name)
Genetic variants : HAPMAP151313
Genomic Variants (DGV)FAHD2B [DGVbeta]
DECIPHERFAHD2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAHD2B 
Mutations
ICGC Data PortalFAHD2B 
TCGA Data PortalFAHD2B 
Broad Tumor PortalFAHD2B
OASIS PortalFAHD2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAHD2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAHD2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAHD2B
DgiDB (Drug Gene Interaction Database)FAHD2B
DoCM (Curated mutations)FAHD2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAHD2B (select a term)
intoGenFAHD2B
Cancer3DFAHD2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAHD2B
Genetic Testing Registry FAHD2B
NextProtQ6P2I3 [Medical]
TSGene151313
GENETestsFAHD2B
Target ValidationFAHD2B
Huge Navigator FAHD2B [HugePedia]
snp3D : Map Gene to Disease151313
BioCentury BCIQFAHD2B
ClinGenFAHD2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151313
Chemical/Pharm GKB GenePA162385597
Clinical trialFAHD2B
Miscellaneous
canSAR (ICR)FAHD2B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAHD2B
EVEXFAHD2B
GoPubMedFAHD2B
iHOPFAHD2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:47:40 CEST 2017

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