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FAM102A (family with sequence similarity 102 member A)

Identity

Alias_namesC9orf132
chromosome 9 open reading frame 132
family with sequence similarity 102, member A
Alias_symbol (synonym)Eeig1
bA203J24.7
SYM-3A
Other aliasEEIG1
HGNC (Hugo) FAM102A
LocusID (NCBI) 399665
Atlas_Id 54296
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 127940582 and ends at 127980533 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM102A (9q34.11) / CIZ1 (9q34.11)FAM102A (9q34.11) / NAIF1 (9q34.11)FAM102A (9q34.11) / PTGES2 (9q34.11)
FAM102A 9q34.11 / NAIF1 9q34.11FAM102A 9q34.11 / PTGES2 9q34.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM102A   31419
Cards
Entrez_Gene (NCBI)FAM102A  399665  family with sequence similarity 102 member A
AliasesC9orf132; EEIG1; SYM-3A; bA203J24.7
GeneCards (Weizmann)FAM102A
Ensembl hg19 (Hinxton)ENSG00000167106 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167106 [Gene_View]  chr9:127940582-127980533 [Contig_View]  FAM102A [Vega]
ICGC DataPortalENSG00000167106
TCGA cBioPortalFAM102A
AceView (NCBI)FAM102A
Genatlas (Paris)FAM102A
WikiGenes399665
SOURCE (Princeton)FAM102A
Genetics Home Reference (NIH)FAM102A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM102A  -     chr9:127940582-127980533 -  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM102A  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblFAM102A - 9q34.11 [CytoView hg19]  FAM102A - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIFAM102A [Mapview hg19]  FAM102A [Mapview hg38]
OMIM610891   
Gene and transcription
Genbank (Entrez)AK058004 AK074108 AL049365 BC047949 BC137087
RefSeq transcript (Entrez)NM_001035254 NM_203305
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM102A
Cluster EST : UnigeneHs.535972 [ NCBI ]
CGAP (NCI)Hs.535972
Alternative Splicing GalleryENSG00000167106
Gene ExpressionFAM102A [ NCBI-GEO ]   FAM102A [ EBI - ARRAY_EXPRESS ]   FAM102A [ SEEK ]   FAM102A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM102A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399665
GTEX Portal (Tissue expression)FAM102A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T9C2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T9C2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T9C2
Splice isoforms : SwissVarQ5T9C2
PhosPhoSitePlusQ5T9C2
Domains : Interpro (EBI)NT-C2   
Domain families : Pfam (Sanger)NT-C2 (PF10358)   
Domain families : Pfam (NCBI)pfam10358   
Conserved Domain (NCBI)FAM102A
DMDM Disease mutations399665
Blocks (Seattle)FAM102A
SuperfamilyQ5T9C2
Human Protein AtlasENSG00000167106
Peptide AtlasQ5T9C2
HPRD13262
IPIIPI00411980   IPI00807610   IPI00465397   IPI00401759   
Protein Interaction databases
DIP (DOE-UCLA)Q5T9C2
IntAct (EBI)Q5T9C2
FunCoupENSG00000167106
BioGRIDFAM102A
STRING (EMBL)FAM102A
ZODIACFAM102A
Ontologies - Pathways
QuickGOQ5T9C2
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM102A
Atlas of Cancer Signalling NetworkFAM102A
Wikipedia pathwaysFAM102A
Orthology - Evolution
OrthoDB399665
GeneTree (enSembl)ENSG00000167106
Phylogenetic Trees/Animal Genes : TreeFamFAM102A
HOVERGENQ5T9C2
HOGENOMQ5T9C2
Homologs : HomoloGeneFAM102A
Homology/Alignments : Family Browser (UCSC)FAM102A
Gene fusions - Rearrangements
Fusion : MitelmanFAM102A/CIZ1 [9q34.11/9q34.11]  
Fusion : MitelmanFAM102A/NAIF1 [9q34.11/9q34.11]  [t(9;9)(q34;q34)]  
Fusion : MitelmanFAM102A/PTGES2 [9q34.11/9q34.11]  [t(9;9)(q34;q34)]  
Fusion: TCGAFAM102A 9q34.11 NAIF1 9q34.11 BRCA
Fusion: TCGAFAM102A 9q34.11 PTGES2 9q34.11 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM102A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM102A
dbVarFAM102A
ClinVarFAM102A
1000_GenomesFAM102A 
Exome Variant ServerFAM102A
ExAC (Exome Aggregation Consortium)FAM102A (select the gene name)
Genetic variants : HAPMAP399665
Genomic Variants (DGV)FAM102A [DGVbeta]
DECIPHERFAM102A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM102A 
Mutations
ICGC Data PortalFAM102A 
TCGA Data PortalFAM102A 
Broad Tumor PortalFAM102A
OASIS PortalFAM102A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM102A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM102A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM102A
DgiDB (Drug Gene Interaction Database)FAM102A
DoCM (Curated mutations)FAM102A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM102A (select a term)
intoGenFAM102A
Cancer3DFAM102A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610891   
Orphanet
MedgenFAM102A
Genetic Testing Registry FAM102A
NextProtQ5T9C2 [Medical]
TSGene399665
GENETestsFAM102A
Target ValidationFAM102A
Huge Navigator FAM102A [HugePedia]
snp3D : Map Gene to Disease399665
BioCentury BCIQFAM102A
ClinGenFAM102A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399665
Chemical/Pharm GKB GenePA142671784
Clinical trialFAM102A
Miscellaneous
canSAR (ICR)FAM102A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM102A
EVEXFAM102A
GoPubMedFAM102A
iHOPFAM102A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:52:59 CEST 2017

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