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FAM102B (family with sequence similarity 102 member B)

Identity

Alias_namesfamily with sequence similarity 102, member B
Alias_symbol (synonym)DKFZp779B126
SYM-3B
Other alias
HGNC (Hugo) FAM102B
LocusID (NCBI) 284611
Atlas_Id 62981
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 108560349 and ends at 108639327 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM102B (1p13.3) / SLC25A24 (1p13.3)FAM102B (1p13.3) / TRAPPC8 (18q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM102B   27637
Cards
Entrez_Gene (NCBI)FAM102B  284611  family with sequence similarity 102 member B
AliasesSYM-3B
GeneCards (Weizmann)FAM102B
Ensembl hg19 (Hinxton)ENSG00000162636 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162636 [Gene_View]  chr1:108560349-108639327 [Contig_View]  FAM102B [Vega]
ICGC DataPortalENSG00000162636
TCGA cBioPortalFAM102B
AceView (NCBI)FAM102B
Genatlas (Paris)FAM102B
WikiGenes284611
SOURCE (Princeton)FAM102B
Genetics Home Reference (NIH)FAM102B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM102B  -     chr1:108560349-108639327 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM102B  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblFAM102B - 1p13.3 [CytoView hg19]  FAM102B - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBIFAM102B [Mapview hg19]  FAM102B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025203 AK094905 BC127898 BC140863 BC140865
RefSeq transcript (Entrez)NM_001010883
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM102B
Cluster EST : UnigeneHs.200230 [ NCBI ]
CGAP (NCI)Hs.200230
Alternative Splicing GalleryENSG00000162636
Gene ExpressionFAM102B [ NCBI-GEO ]   FAM102B [ EBI - ARRAY_EXPRESS ]   FAM102B [ SEEK ]   FAM102B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM102B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284611
GTEX Portal (Tissue expression)FAM102B
Human Protein AtlasENSG00000162636-FAM102B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T8I3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T8I3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T8I3
Splice isoforms : SwissVarQ5T8I3
PhosPhoSitePlusQ5T8I3
Domains : Interpro (EBI)NT-C2   
Domain families : Pfam (Sanger)NT-C2 (PF10358)   
Domain families : Pfam (NCBI)pfam10358   
Conserved Domain (NCBI)FAM102B
DMDM Disease mutations284611
Blocks (Seattle)FAM102B
SuperfamilyQ5T8I3
Human Protein Atlas [tissue]ENSG00000162636-FAM102B [tissue]
Peptide AtlasQ5T8I3
HPRD17339
IPIIPI00374018   IPI00893233   
Protein Interaction databases
DIP (DOE-UCLA)Q5T8I3
IntAct (EBI)Q5T8I3
FunCoupENSG00000162636
BioGRIDFAM102B
STRING (EMBL)FAM102B
ZODIACFAM102B
Ontologies - Pathways
QuickGOQ5T8I3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM102B
Atlas of Cancer Signalling NetworkFAM102B
Wikipedia pathwaysFAM102B
Orthology - Evolution
OrthoDB284611
GeneTree (enSembl)ENSG00000162636
Phylogenetic Trees/Animal Genes : TreeFamFAM102B
HOVERGENQ5T8I3
HOGENOMQ5T8I3
Homologs : HomoloGeneFAM102B
Homology/Alignments : Family Browser (UCSC)FAM102B
Gene fusions - Rearrangements
Tumor Fusion PortalFAM102B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM102B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM102B
dbVarFAM102B
ClinVarFAM102B
1000_GenomesFAM102B 
Exome Variant ServerFAM102B
ExAC (Exome Aggregation Consortium)ENSG00000162636
GNOMAD BrowserENSG00000162636
Genetic variants : HAPMAP284611
Genomic Variants (DGV)FAM102B [DGVbeta]
DECIPHERFAM102B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM102B 
Mutations
ICGC Data PortalFAM102B 
TCGA Data PortalFAM102B 
Broad Tumor PortalFAM102B
OASIS PortalFAM102B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM102B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM102B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM102B
DgiDB (Drug Gene Interaction Database)FAM102B
DoCM (Curated mutations)FAM102B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM102B (select a term)
intoGenFAM102B
Cancer3DFAM102B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM102B
MedgenFAM102B
Genetic Testing Registry FAM102B
NextProtQ5T8I3 [Medical]
TSGene284611
GENETestsFAM102B
Target ValidationFAM102B
Huge Navigator FAM102B [HugePedia]
snp3D : Map Gene to Disease284611
BioCentury BCIQFAM102B
ClinGenFAM102B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284611
Chemical/Pharm GKB GenePA142671785
Clinical trialFAM102B
Miscellaneous
canSAR (ICR)FAM102B (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM102B
EVEXFAM102B
GoPubMedFAM102B
iHOPFAM102B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:28:15 CET 2017

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