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FAM103A1 (family with sequence similarity 103 member A1)

Identity

Alias_namesfamily with sequence similarity 103, member A1
Alias_symbol (synonym)HsT19360
C15orf18
MGC2560
RAM
Other alias
HGNC (Hugo) FAM103A1
LocusID (NCBI) 83640
Atlas_Id 62982
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 82986203 and ends at 82991057 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM103A1   31022
Cards
Entrez_Gene (NCBI)FAM103A1  83640  family with sequence similarity 103 member A1
AliasesC15orf18; HsT19360; RAM
GeneCards (Weizmann)FAM103A1
Ensembl hg19 (Hinxton)ENSG00000169612 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169612 [Gene_View]  chr15:82986203-82991057 [Contig_View]  FAM103A1 [Vega]
ICGC DataPortalENSG00000169612
TCGA cBioPortalFAM103A1
AceView (NCBI)FAM103A1
Genatlas (Paris)FAM103A1
WikiGenes83640
SOURCE (Princeton)FAM103A1
Genetics Home Reference (NIH)FAM103A1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM103A1  -     chr15:82986203-82991057 +  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM103A1  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblFAM103A1 - 15q25.2 [CytoView hg19]  FAM103A1 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBIFAM103A1 [Mapview hg19]  FAM103A1 [Mapview hg38]
OMIM614547   
Gene and transcription
Genbank (Entrez)AK027095 AL049237 BC003627 BC027181 BC112329
RefSeq transcript (Entrez)NM_031452
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM103A1
Cluster EST : UnigeneHs.80624 [ NCBI ]
CGAP (NCI)Hs.80624
Alternative Splicing GalleryENSG00000169612
Gene ExpressionFAM103A1 [ NCBI-GEO ]   FAM103A1 [ EBI - ARRAY_EXPRESS ]   FAM103A1 [ SEEK ]   FAM103A1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM103A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83640
GTEX Portal (Tissue expression)FAM103A1
Human Protein AtlasENSG00000169612-FAM103A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTL3
Splice isoforms : SwissVarQ9BTL3
PhosPhoSitePlusQ9BTL3
Domains : Interpro (EBI)RAM   
Domain families : Pfam (Sanger)RAM (PF15320)   
Domain families : Pfam (NCBI)pfam15320   
Conserved Domain (NCBI)FAM103A1
DMDM Disease mutations83640
Blocks (Seattle)FAM103A1
PDB (SRS)5E8J   
PDB (PDBSum)5E8J   
PDB (IMB)5E8J   
PDB (RSDB)5E8J   
Structural Biology KnowledgeBase5E8J   
SCOP (Structural Classification of Proteins)5E8J   
CATH (Classification of proteins structures)5E8J   
SuperfamilyQ9BTL3
Human Protein Atlas [tissue]ENSG00000169612-FAM103A1 [tissue]
Peptide AtlasQ9BTL3
HPRD12845
IPIIPI00027798   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTL3
IntAct (EBI)Q9BTL3
FunCoupENSG00000169612
BioGRIDFAM103A1
STRING (EMBL)FAM103A1
ZODIACFAM103A1
Ontologies - Pathways
QuickGOQ9BTL3
Ontology : AmiGORNA binding  protein binding  nucleus  nucleoplasm  mRNA cap binding complex  7-methylguanosine mRNA capping  methylation  recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleoplasm  mRNA cap binding complex  7-methylguanosine mRNA capping  methylation  recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex  
NDEx NetworkFAM103A1
Atlas of Cancer Signalling NetworkFAM103A1
Wikipedia pathwaysFAM103A1
Orthology - Evolution
OrthoDB83640
GeneTree (enSembl)ENSG00000169612
Phylogenetic Trees/Animal Genes : TreeFamFAM103A1
HOVERGENQ9BTL3
HOGENOMQ9BTL3
Homologs : HomoloGeneFAM103A1
Homology/Alignments : Family Browser (UCSC)FAM103A1
Gene fusions - Rearrangements
Tumor Fusion PortalFAM103A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM103A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM103A1
dbVarFAM103A1
ClinVarFAM103A1
1000_GenomesFAM103A1 
Exome Variant ServerFAM103A1
ExAC (Exome Aggregation Consortium)ENSG00000169612
GNOMAD BrowserENSG00000169612
Genetic variants : HAPMAP83640
Genomic Variants (DGV)FAM103A1 [DGVbeta]
DECIPHERFAM103A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM103A1 
Mutations
ICGC Data PortalFAM103A1 
TCGA Data PortalFAM103A1 
Broad Tumor PortalFAM103A1
OASIS PortalFAM103A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM103A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM103A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM103A1
DgiDB (Drug Gene Interaction Database)FAM103A1
DoCM (Curated mutations)FAM103A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM103A1 (select a term)
intoGenFAM103A1
Cancer3DFAM103A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614547   
Orphanet
DisGeNETFAM103A1
MedgenFAM103A1
Genetic Testing Registry FAM103A1
NextProtQ9BTL3 [Medical]
TSGene83640
GENETestsFAM103A1
Target ValidationFAM103A1
Huge Navigator FAM103A1 [HugePedia]
snp3D : Map Gene to Disease83640
BioCentury BCIQFAM103A1
ClinGenFAM103A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83640
Chemical/Pharm GKB GenePA142671786
Clinical trialFAM103A1
Miscellaneous
canSAR (ICR)FAM103A1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM103A1
EVEXFAM103A1
GoPubMedFAM103A1
iHOPFAM103A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:28:15 CET 2017

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