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FAM104A (family with sequence similarity 104 member A)

Identity

Alias_namesfamily with sequence similarity 104
Alias_symbol (synonym)FLJ14775
Other alias-
HGNC (Hugo) FAM104A
LocusID (NCBI) 84923
Atlas_Id 54297
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 73207353 and ends at 73232394 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COG1 (17q25.1) / FAM104A (17q25.1)FAM104A (17q25.1) / C17orf80 (17q25.1)FAM104A (17q25.1) / EEF1D (8q24.3)
FAM104A (17q25.1) / FXR2 (17p13.1)TMC6 (17q25.3) / FAM104A (17q25.1)UNK (17q25.1) / FAM104A (17q25.1)
TMC6 17q25.3 / FAM104A 17q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM104A   25918
Cards
Entrez_Gene (NCBI)FAM104A  84923  family with sequence similarity 104 member A
Aliases
GeneCards (Weizmann)FAM104A
Ensembl hg19 (Hinxton)ENSG00000133193 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133193 [Gene_View]  chr17:73207353-73232394 [Contig_View]  FAM104A [Vega]
ICGC DataPortalENSG00000133193
TCGA cBioPortalFAM104A
AceView (NCBI)FAM104A
Genatlas (Paris)FAM104A
WikiGenes84923
SOURCE (Princeton)FAM104A
Genetics Home Reference (NIH)FAM104A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM104A  -     chr17:73207353-73232394 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM104A  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblFAM104A - 17q25.1 [CytoView hg19]  FAM104A - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIFAM104A [Mapview hg19]  FAM104A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI926103 AK027681 AK074755 AK304556 BC011054
RefSeq transcript (Entrez)NM_001098832 NM_001289410 NM_001289411 NM_001289412 NM_032837
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM104A
Cluster EST : UnigeneHs.741276 [ NCBI ]
CGAP (NCI)Hs.741276
Alternative Splicing GalleryENSG00000133193
Gene ExpressionFAM104A [ NCBI-GEO ]   FAM104A [ EBI - ARRAY_EXPRESS ]   FAM104A [ SEEK ]   FAM104A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM104A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84923
GTEX Portal (Tissue expression)FAM104A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969W3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969W3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969W3
Splice isoforms : SwissVarQ969W3
PhosPhoSitePlusQ969W3
Domains : Interpro (EBI)FAM104   
Domain families : Pfam (Sanger)FAM104 (PF15434)   
Domain families : Pfam (NCBI)pfam15434   
Conserved Domain (NCBI)FAM104A
DMDM Disease mutations84923
Blocks (Seattle)FAM104A
SuperfamilyQ969W3
Human Protein AtlasENSG00000133193
Peptide AtlasQ969W3
HPRD08602
IPIIPI00879757   IPI00792344   
Protein Interaction databases
DIP (DOE-UCLA)Q969W3
IntAct (EBI)Q969W3
FunCoupENSG00000133193
BioGRIDFAM104A
STRING (EMBL)FAM104A
ZODIACFAM104A
Ontologies - Pathways
QuickGOQ969W3
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM104A
Atlas of Cancer Signalling NetworkFAM104A
Wikipedia pathwaysFAM104A
Orthology - Evolution
OrthoDB84923
GeneTree (enSembl)ENSG00000133193
Phylogenetic Trees/Animal Genes : TreeFamFAM104A
HOVERGENQ969W3
HOGENOMQ969W3
Homologs : HomoloGeneFAM104A
Homology/Alignments : Family Browser (UCSC)FAM104A
Gene fusions - Rearrangements
Fusion : MitelmanFAM104A/C17orf80 [17q25.1/17q25.1]  
Fusion : MitelmanTMC6/FAM104A [17q25.3/17q25.1]  [t(17;17)(q25;q25)]  
Fusion: TCGATMC6 17q25.3 FAM104A 17q25.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM104A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM104A
dbVarFAM104A
ClinVarFAM104A
1000_GenomesFAM104A 
Exome Variant ServerFAM104A
ExAC (Exome Aggregation Consortium)FAM104A (select the gene name)
Genetic variants : HAPMAP84923
Genomic Variants (DGV)FAM104A [DGVbeta]
DECIPHERFAM104A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM104A 
Mutations
ICGC Data PortalFAM104A 
TCGA Data PortalFAM104A 
Broad Tumor PortalFAM104A
OASIS PortalFAM104A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM104A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM104A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM104A
DgiDB (Drug Gene Interaction Database)FAM104A
DoCM (Curated mutations)FAM104A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM104A (select a term)
intoGenFAM104A
Cancer3DFAM104A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM104A
Genetic Testing Registry FAM104A
NextProtQ969W3 [Medical]
TSGene84923
GENETestsFAM104A
Target ValidationFAM104A
Huge Navigator FAM104A [HugePedia]
snp3D : Map Gene to Disease84923
BioCentury BCIQFAM104A
ClinGenFAM104A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84923
Chemical/Pharm GKB GenePA142671787
Clinical trialFAM104A
Miscellaneous
canSAR (ICR)FAM104A (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM104A
EVEXFAM104A
GoPubMedFAM104A
iHOPFAM104A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:07:38 CEST 2017

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