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FAM105A (family with sequence similarity 105, member A)

Identity

Alias_namesfamily with sequence similarity 105, member A
Alias_symbol (synonym)FLJ11127
NET20
Other alias
HGNC (Hugo) FAM105A
LocusID (NCBI) 54491
Atlas_Id 62984
Location 5p15.2  [Link to chromosome band 5p15]
Location_base_pair Starts at 14581891 and ends at 14616287 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ABCC1 (16p13.11) / FAM105A (5p15.2)FAM105A (5p15.2) / DHCR24 (1p32.3)FAM105A (5p15.2) / FAM105A (5p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM105A   25629
Cards
Entrez_Gene (NCBI)FAM105A  54491  family with sequence similarity 105, member A
AliasesNET20
GeneCards (Weizmann)FAM105A
Ensembl hg19 (Hinxton) [Gene_View]  chr5:14581891-14616287 [Contig_View]  FAM105A [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:14581891-14616287 [Contig_View]  FAM105A [Vega]
TCGA cBioPortalFAM105A
AceView (NCBI)FAM105A
Genatlas (Paris)FAM105A
WikiGenes54491
SOURCE (Princeton)FAM105A
Genetics Home Reference (NIH)FAM105A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM105A  -     chr5:14581891-14616287 +  5p15.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM105A  -     5p15.2   [Description]    (hg38-Dec_2013)
EnsemblFAM105A - 5p15.2 [CytoView hg19]  FAM105A - 5p15.2 [CytoView hg38]
Mapping of homologs : NCBIFAM105A [Mapview hg19]  FAM105A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF052146 AK001989 AK125648 AK222731 AL512750
RefSeq transcript (Entrez)NM_019018
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)FAM105A
Cluster EST : UnigeneHs.155085 [ NCBI ]
CGAP (NCI)Hs.155085
Gene ExpressionFAM105A [ NCBI-GEO ]   FAM105A [ EBI - ARRAY_EXPRESS ]   FAM105A [ SEEK ]   FAM105A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM105A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54491
GTEX Portal (Tissue expression)FAM105A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUU6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUU6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUU6
Splice isoforms : SwissVarQ9NUU6
PhosPhoSitePlusQ9NUU6
Domains : Interpro (EBI)FAM105    FAM105A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM105A
DMDM Disease mutations54491
Blocks (Seattle)FAM105A
SuperfamilyQ9NUU6
Peptide AtlasQ9NUU6
HPRD07733
IPIIPI00004563   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUU6
IntAct (EBI)Q9NUU6
BioGRIDFAM105A
STRING (EMBL)FAM105A
ZODIACFAM105A
Ontologies - Pathways
QuickGOQ9NUU6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM105A
Atlas of Cancer Signalling NetworkFAM105A
Wikipedia pathwaysFAM105A
Orthology - Evolution
OrthoDB54491
Phylogenetic Trees/Animal Genes : TreeFamFAM105A
HOVERGENQ9NUU6
HOGENOMQ9NUU6
Homologs : HomoloGeneFAM105A
Homology/Alignments : Family Browser (UCSC)FAM105A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM105A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM105A
dbVarFAM105A
ClinVarFAM105A
1000_GenomesFAM105A 
Exome Variant ServerFAM105A
ExAC (Exome Aggregation Consortium)FAM105A (select the gene name)
Genetic variants : HAPMAP54491
Genomic Variants (DGV)FAM105A [DGVbeta]
DECIPHER (Syndromes)5:14581891-14616287  
CONAN: Copy Number AnalysisFAM105A 
Mutations
ICGC Data PortalFAM105A 
TCGA Data PortalFAM105A 
Broad Tumor PortalFAM105A
OASIS PortalFAM105A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM105A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM105A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM105A
DgiDB (Drug Gene Interaction Database)FAM105A
DoCM (Curated mutations)FAM105A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM105A (select a term)
intoGenFAM105A
Cancer3DFAM105A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM105A
Genetic Testing Registry FAM105A
NextProtQ9NUU6 [Medical]
TSGene54491
GENETestsFAM105A
Huge Navigator FAM105A [HugePedia]
snp3D : Map Gene to Disease54491
BioCentury BCIQFAM105A
ClinGenFAM105A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54491
Chemical/Pharm GKB GenePA142671788
Clinical trialFAM105A
Miscellaneous
canSAR (ICR)FAM105A (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM105A
EVEXFAM105A
GoPubMedFAM105A
iHOPFAM105A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:23 CET 2017

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