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FAM106A (family with sequence similarity 106, member A)

Identity

Alias_namesfamily with sequence similarity 106, member A
Alias_symbol (synonym)FLJ11800
Other alias-
HGNC (Hugo) FAM106A
LocusID (NCBI) 80039
Atlas_Id 62985
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 18427880 and ends at 18430160 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM106A   25682
Cards
Entrez_Gene (NCBI)FAM106A  80039  family with sequence similarity 106, member A
Aliases
GeneCards (Weizmann)FAM106A
Ensembl hg19 (Hinxton)ENSG00000213077 [Gene_View]  chr17:18427880-18430160 [Contig_View]  FAM106A [Vega]
Ensembl hg38 (Hinxton)ENSG00000213077 [Gene_View]  chr17:18427880-18430160 [Contig_View]  FAM106A [Vega]
ICGC DataPortalENSG00000213077
TCGA cBioPortalFAM106A
AceView (NCBI)FAM106A
Genatlas (Paris)FAM106A
WikiGenes80039
SOURCE (Princeton)FAM106A
Genetics Home Reference (NIH)FAM106A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM106A  -     chr17:18427880-18430160 -  17p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM106A  -     17p11.2   [Description]    (hg38-Dec_2013)
EnsemblFAM106A - 17p11.2 [CytoView hg19]  FAM106A - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBIFAM106A [Mapview hg19]  FAM106A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK021862 BC098263
RefSeq transcript (Entrez)NM_024974
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)FAM106A
Cluster EST : UnigeneHs.674403 [ NCBI ]
CGAP (NCI)Hs.674403
Alternative Splicing GalleryENSG00000213077
Gene ExpressionFAM106A [ NCBI-GEO ]   FAM106A [ EBI - ARRAY_EXPRESS ]   FAM106A [ SEEK ]   FAM106A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM106A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80039
GTEX Portal (Tissue expression)FAM106A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4KMX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4KMX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4KMX7
Splice isoforms : SwissVarQ4KMX7
PhosPhoSitePlusQ4KMX7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM106A
DMDM Disease mutations80039
Blocks (Seattle)FAM106A
SuperfamilyQ4KMX7
Human Protein AtlasENSG00000213077
Peptide AtlasQ4KMX7
HPRD07759
IPIIPI00017306   
Protein Interaction databases
DIP (DOE-UCLA)Q4KMX7
IntAct (EBI)Q4KMX7
FunCoupENSG00000213077
BioGRIDFAM106A
STRING (EMBL)FAM106A
ZODIACFAM106A
Ontologies - Pathways
QuickGOQ4KMX7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM106A
Atlas of Cancer Signalling NetworkFAM106A
Wikipedia pathwaysFAM106A
Orthology - Evolution
OrthoDB80039
GeneTree (enSembl)ENSG00000213077
Phylogenetic Trees/Animal Genes : TreeFamFAM106A
HOVERGENQ4KMX7
HOGENOMQ4KMX7
Homologs : HomoloGeneFAM106A
Homology/Alignments : Family Browser (UCSC)FAM106A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM106A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM106A
dbVarFAM106A
ClinVarFAM106A
1000_GenomesFAM106A 
Exome Variant ServerFAM106A
ExAC (Exome Aggregation Consortium)FAM106A (select the gene name)
Genetic variants : HAPMAP80039
Genomic Variants (DGV)FAM106A [DGVbeta]
DECIPHER (Syndromes)17:18427880-18430160  ENSG00000213077
CONAN: Copy Number AnalysisFAM106A 
Mutations
ICGC Data PortalFAM106A 
TCGA Data PortalFAM106A 
Broad Tumor PortalFAM106A
OASIS PortalFAM106A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM106A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM106A
BioMutasearch FAM106A
DgiDB (Drug Gene Interaction Database)FAM106A
DoCM (Curated mutations)FAM106A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM106A (select a term)
intoGenFAM106A
Cancer3DFAM106A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM106A
Genetic Testing Registry FAM106A
NextProtQ4KMX7 [Medical]
TSGene80039
GENETestsFAM106A
Huge Navigator FAM106A [HugePedia]
snp3D : Map Gene to Disease80039
BioCentury BCIQFAM106A
ClinGenFAM106A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80039
Chemical/Pharm GKB GenePA142671790
Clinical trialFAM106A
Miscellaneous
canSAR (ICR)FAM106A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM106A
EVEXFAM106A
GoPubMedFAM106A
iHOPFAM106A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:23 CET 2017

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