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FAM106CP (family with sequence similarity 106 member C, pseudogene)

Identity

Alias_namesFAM106C
family with sequence similarity 106, member C, pseudogene
Other alias
HGNC (Hugo) FAM106CP
LocusID (NCBI) 100129396
Atlas_Id 62987
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 16788743 and ends at 16790501 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM106CP   38396
Cards
Entrez_Gene (NCBI)FAM106CP  100129396  family with sequence similarity 106 member C, pseudogene
AliasesFAM106C
GeneCards (Weizmann)FAM106CP
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:16788743-16790501 [Contig_View]  FAM106CP [Vega]
TCGA cBioPortalFAM106CP
AceView (NCBI)FAM106CP
Genatlas (Paris)FAM106CP
WikiGenes100129396
SOURCE (Princeton)FAM106CP
Genetics Home Reference (NIH)FAM106CP
Genomic and cartography
GoldenPath hg38 (UCSC)FAM106CP  -     chr17:16788743-16790501 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM106CP  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblFAM106CP - 17p11.2 [CytoView hg19]  FAM106CP - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBIFAM106CP [Mapview hg19]  FAM106CP [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC098294 BC098363 DN989334
RefSeq transcript (Entrez)NM_001348162
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM106CP
Cluster EST : UnigeneHs.712114 [ NCBI ]
CGAP (NCI)Hs.712114
Gene ExpressionFAM106CP [ NCBI-GEO ]   FAM106CP [ EBI - ARRAY_EXPRESS ]   FAM106CP [ SEEK ]   FAM106CP [ MEM ]
Gene Expression Viewer (FireBrowse)FAM106CP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129396
GTEX Portal (Tissue expression)FAM106CP
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CH98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CH98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CH98
Splice isoforms : SwissVarP0CH98
PhosPhoSitePlusP0CH98
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM106CP
DMDM Disease mutations100129396
Blocks (Seattle)FAM106CP
SuperfamilyP0CH98
Peptide AtlasP0CH98
IPIIPI00970882   
Protein Interaction databases
DIP (DOE-UCLA)P0CH98
IntAct (EBI)P0CH98
BioGRIDFAM106CP
STRING (EMBL)FAM106CP
ZODIACFAM106CP
Ontologies - Pathways
QuickGOP0CH98
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM106CP
Atlas of Cancer Signalling NetworkFAM106CP
Wikipedia pathwaysFAM106CP
Orthology - Evolution
OrthoDB100129396
Phylogenetic Trees/Animal Genes : TreeFamFAM106CP
HOVERGENP0CH98
HOGENOMP0CH98
Homologs : HomoloGeneFAM106CP
Homology/Alignments : Family Browser (UCSC)FAM106CP
Gene fusions - Rearrangements
Fusion: Tumor Portal FAM106CP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM106CP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM106CP
dbVarFAM106CP
ClinVarFAM106CP
1000_GenomesFAM106CP 
Exome Variant ServerFAM106CP
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP100129396
Genomic Variants (DGV)FAM106CP [DGVbeta]
DECIPHERFAM106CP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM106CP 
Mutations
ICGC Data PortalFAM106CP 
TCGA Data PortalFAM106CP 
Broad Tumor PortalFAM106CP
OASIS PortalFAM106CP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM106CP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM106CP
DgiDB (Drug Gene Interaction Database)FAM106CP
DoCM (Curated mutations)FAM106CP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM106CP (select a term)
intoGenFAM106CP
Cancer3DFAM106CP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM106CP
Genetic Testing Registry FAM106CP
NextProtP0CH98 [Medical]
TSGene100129396
GENETestsFAM106CP
Target ValidationFAM106CP
Huge Navigator FAM106CP [HugePedia]
snp3D : Map Gene to Disease100129396
BioCentury BCIQFAM106CP
ClinGenFAM106CP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129396
Clinical trialFAM106CP
Miscellaneous
canSAR (ICR)FAM106CP (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM106CP
EVEXFAM106CP
GoPubMedFAM106CP
iHOPFAM106CP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:46:22 CET 2017

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