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FAM109A (family with sequence similarity 109 member A)

Identity

Alias_namesfamily with sequence similarity 109, member A
Alias_symbol (synonym)FLJ32356
SES1
IPIP27A
Other alias
HGNC (Hugo) FAM109A
LocusID (NCBI) 144717
Atlas_Id 62988
Location 12q24.12  [Link to chromosome band 12q24]
Location_base_pair Starts at 111360651 and ends at 111369121 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM109A   26509
Cards
Entrez_Gene (NCBI)FAM109A  144717  family with sequence similarity 109 member A
AliasesIPIP27A; SES1
GeneCards (Weizmann)FAM109A
Ensembl hg19 (Hinxton)ENSG00000198324 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198324 [Gene_View]  chr12:111360651-111369121 [Contig_View]  FAM109A [Vega]
ICGC DataPortalENSG00000198324
TCGA cBioPortalFAM109A
AceView (NCBI)FAM109A
Genatlas (Paris)FAM109A
WikiGenes144717
SOURCE (Princeton)FAM109A
Genetics Home Reference (NIH)FAM109A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM109A  -     chr12:111360651-111369121 -  12q24.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM109A  -     12q24.12   [Description]    (hg19-Feb_2009)
EnsemblFAM109A - 12q24.12 [CytoView hg19]  FAM109A - 12q24.12 [CytoView hg38]
Mapping of homologs : NCBIFAM109A [Mapview hg19]  FAM109A [Mapview hg38]
OMIM614239   
Gene and transcription
Genbank (Entrez)AK056918 AK093052 AK299344 BC014091 BC018996
RefSeq transcript (Entrez)NM_001177996 NM_001177997 NM_144671
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM109A
Cluster EST : UnigeneHs.173088 [ NCBI ]
CGAP (NCI)Hs.173088
Alternative Splicing GalleryENSG00000198324
Gene ExpressionFAM109A [ NCBI-GEO ]   FAM109A [ EBI - ARRAY_EXPRESS ]   FAM109A [ SEEK ]   FAM109A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM109A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144717
GTEX Portal (Tissue expression)FAM109A
Human Protein AtlasENSG00000198324-FAM109A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4B1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4B1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4B1
Splice isoforms : SwissVarQ8N4B1
PhosPhoSitePlusQ8N4B1
Domaine pattern : Prosite (Expaxy)PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)PH_dom-like    PH_domain   
Domain families : Pfam (Sanger)PH (PF00169)   
Domain families : Pfam (NCBI)pfam00169   
Domain families : Smart (EMBL)PH (SM00233)  
Conserved Domain (NCBI)FAM109A
DMDM Disease mutations144717
Blocks (Seattle)FAM109A
PDB (SRS)3QIS   
PDB (PDBSum)3QIS   
PDB (IMB)3QIS   
PDB (RSDB)3QIS   
Structural Biology KnowledgeBase3QIS   
SCOP (Structural Classification of Proteins)3QIS   
CATH (Classification of proteins structures)3QIS   
SuperfamilyQ8N4B1
Human Protein Atlas [tissue]ENSG00000198324-FAM109A [tissue]
Peptide AtlasQ8N4B1
HPRD08127
IPIIPI00171062   IPI00789570   IPI00789670   IPI01022762   IPI01023047   IPI01021892   IPI00167935   IPI00965252   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4B1
IntAct (EBI)Q8N4B1
FunCoupENSG00000198324
BioGRIDFAM109A
STRING (EMBL)FAM109A
ZODIACFAM109A
Ontologies - Pathways
QuickGOQ8N4B1
Ontology : AmiGOreceptor recycling  protein binding  early endosome  trans-Golgi network  cytosol  endosome organization  clathrin-coated vesicle  retrograde transport, endosome to Golgi  protein homodimerization activity  recycling endosome  
Ontology : EGO-EBIreceptor recycling  protein binding  early endosome  trans-Golgi network  cytosol  endosome organization  clathrin-coated vesicle  retrograde transport, endosome to Golgi  protein homodimerization activity  recycling endosome  
NDEx NetworkFAM109A
Atlas of Cancer Signalling NetworkFAM109A
Wikipedia pathwaysFAM109A
Orthology - Evolution
OrthoDB144717
GeneTree (enSembl)ENSG00000198324
Phylogenetic Trees/Animal Genes : TreeFamFAM109A
HOVERGENQ8N4B1
HOGENOMQ8N4B1
Homologs : HomoloGeneFAM109A
Homology/Alignments : Family Browser (UCSC)FAM109A
Gene fusions - Rearrangements
Tumor Fusion PortalFAM109A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM109A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM109A
dbVarFAM109A
ClinVarFAM109A
1000_GenomesFAM109A 
Exome Variant ServerFAM109A
ExAC (Exome Aggregation Consortium)ENSG00000198324
GNOMAD BrowserENSG00000198324
Genetic variants : HAPMAP144717
Genomic Variants (DGV)FAM109A [DGVbeta]
DECIPHERFAM109A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM109A 
Mutations
ICGC Data PortalFAM109A 
TCGA Data PortalFAM109A 
Broad Tumor PortalFAM109A
OASIS PortalFAM109A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM109A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM109A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM109A
DgiDB (Drug Gene Interaction Database)FAM109A
DoCM (Curated mutations)FAM109A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM109A (select a term)
intoGenFAM109A
Cancer3DFAM109A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614239   
Orphanet
DisGeNETFAM109A
MedgenFAM109A
Genetic Testing Registry FAM109A
NextProtQ8N4B1 [Medical]
TSGene144717
GENETestsFAM109A
Target ValidationFAM109A
Huge Navigator FAM109A [HugePedia]
snp3D : Map Gene to Disease144717
BioCentury BCIQFAM109A
ClinGenFAM109A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144717
Chemical/Pharm GKB GenePA143485466
Clinical trialFAM109A
Miscellaneous
canSAR (ICR)FAM109A (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM109A
EVEXFAM109A
GoPubMedFAM109A
iHOPFAM109A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:26:06 CET 2017

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