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FAM109B (family with sequence similarity 109 member B)

Identity

Alias_namesfamily with sequence similarity 109, member B
Alias_symbol (synonym)DKFZp686J07229
SES2
IPIP27B
Other aliasSes2
HGNC (Hugo) FAM109B
LocusID (NCBI) 150368
Atlas_Id 62989
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 42074251 and ends at 42079438 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM109B   27161
Cards
Entrez_Gene (NCBI)FAM109B  150368  family with sequence similarity 109 member B
AliasesIPIP27B; Ses2
GeneCards (Weizmann)FAM109B
Ensembl hg19 (Hinxton)ENSG00000177096 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177096 [Gene_View]  chr22:42074251-42079438 [Contig_View]  FAM109B [Vega]
ICGC DataPortalENSG00000177096
TCGA cBioPortalFAM109B
AceView (NCBI)FAM109B
Genatlas (Paris)FAM109B
WikiGenes150368
SOURCE (Princeton)FAM109B
Genetics Home Reference (NIH)FAM109B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM109B  -     chr22:42074251-42079438 +  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM109B  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblFAM109B - 22q13.2 [CytoView hg19]  FAM109B - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBIFAM109B [Mapview hg19]  FAM109B [Mapview hg38]
OMIM614240   
Gene and transcription
Genbank (Entrez)BC029776 BC104175 BC104176 BX648402 CR456454
RefSeq transcript (Entrez)NM_001002034
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_187682 NW_003315971 NW_004504305
Consensus coding sequences : CCDS (NCBI)FAM109B
Cluster EST : UnigeneHs.368312 [ NCBI ]
CGAP (NCI)Hs.368312
Alternative Splicing GalleryENSG00000177096
Gene ExpressionFAM109B [ NCBI-GEO ]   FAM109B [ EBI - ARRAY_EXPRESS ]   FAM109B [ SEEK ]   FAM109B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM109B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150368
GTEX Portal (Tissue expression)FAM109B
Human Protein AtlasENSG00000177096-FAM109B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ICB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ICB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ICB4
Splice isoforms : SwissVarQ6ICB4
PhosPhoSitePlusQ6ICB4
Domaine pattern : Prosite (Expaxy)PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)PH_dom-like    PH_domain   
Domain families : Pfam (Sanger)PH (PF00169)   
Domain families : Pfam (NCBI)pfam00169   
Domain families : Smart (EMBL)PH (SM00233)  
Conserved Domain (NCBI)FAM109B
DMDM Disease mutations150368
Blocks (Seattle)FAM109B
SuperfamilyQ6ICB4
Human Protein Atlas [tissue]ENSG00000177096-FAM109B [tissue]
Peptide AtlasQ6ICB4
HPRD17305
IPIIPI00297381   IPI00893834   
Protein Interaction databases
DIP (DOE-UCLA)Q6ICB4
IntAct (EBI)Q6ICB4
FunCoupENSG00000177096
BioGRIDFAM109B
STRING (EMBL)FAM109B
ZODIACFAM109B
Ontologies - Pathways
QuickGOQ6ICB4
Ontology : AmiGOreceptor recycling  protein binding  early endosome  trans-Golgi network  cytosol  endosome organization  clathrin-coated vesicle  retrograde transport, endosome to Golgi  protein homodimerization activity  recycling endosome  
Ontology : EGO-EBIreceptor recycling  protein binding  early endosome  trans-Golgi network  cytosol  endosome organization  clathrin-coated vesicle  retrograde transport, endosome to Golgi  protein homodimerization activity  recycling endosome  
NDEx NetworkFAM109B
Atlas of Cancer Signalling NetworkFAM109B
Wikipedia pathwaysFAM109B
Orthology - Evolution
OrthoDB150368
GeneTree (enSembl)ENSG00000177096
Phylogenetic Trees/Animal Genes : TreeFamFAM109B
HOVERGENQ6ICB4
HOGENOMQ6ICB4
Homologs : HomoloGeneFAM109B
Homology/Alignments : Family Browser (UCSC)FAM109B
Gene fusions - Rearrangements
Tumor Fusion PortalFAM109B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM109B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM109B
dbVarFAM109B
ClinVarFAM109B
1000_GenomesFAM109B 
Exome Variant ServerFAM109B
ExAC (Exome Aggregation Consortium)ENSG00000177096
GNOMAD BrowserENSG00000177096
Genetic variants : HAPMAP150368
Genomic Variants (DGV)FAM109B [DGVbeta]
DECIPHERFAM109B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM109B 
Mutations
ICGC Data PortalFAM109B 
TCGA Data PortalFAM109B 
Broad Tumor PortalFAM109B
OASIS PortalFAM109B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM109B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM109B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM109B
DgiDB (Drug Gene Interaction Database)FAM109B
DoCM (Curated mutations)FAM109B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM109B (select a term)
intoGenFAM109B
Cancer3DFAM109B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614240   
Orphanet
DisGeNETFAM109B
MedgenFAM109B
Genetic Testing Registry FAM109B
NextProtQ6ICB4 [Medical]
TSGene150368
GENETestsFAM109B
Target ValidationFAM109B
Huge Navigator FAM109B [HugePedia]
snp3D : Map Gene to Disease150368
BioCentury BCIQFAM109B
ClinGenFAM109B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150368
Chemical/Pharm GKB GenePA143485467
Clinical trialFAM109B
Miscellaneous
canSAR (ICR)FAM109B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM109B
EVEXFAM109B
GoPubMedFAM109B
iHOPFAM109B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:43:38 CET 2017

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