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FAM110A (family with sequence similarity 110 member A)

Identity

Alias_namesC20orf55
chromosome 20 open reading frame 55
family with sequence similarity 110, member A
Alias_symbol (synonym)bA371L19.3
Other aliasF10
HGNC (Hugo) FAM110A
LocusID (NCBI) 83541
Atlas_Id 62990
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 833697 and ends at 846279 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MORN1 (1p36.33) / FAM110A (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM110A   16188
Cards
Entrez_Gene (NCBI)FAM110A  83541  family with sequence similarity 110 member A
AliasesC20orf55; F10; bA371L19.3
GeneCards (Weizmann)FAM110A
Ensembl hg19 (Hinxton)ENSG00000125898 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125898 [Gene_View]  chr20:833697-846279 [Contig_View]  FAM110A [Vega]
ICGC DataPortalENSG00000125898
TCGA cBioPortalFAM110A
AceView (NCBI)FAM110A
Genatlas (Paris)FAM110A
WikiGenes83541
SOURCE (Princeton)FAM110A
Genetics Home Reference (NIH)FAM110A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM110A  -     chr20:833697-846279 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM110A  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblFAM110A - 20p13 [CytoView hg19]  FAM110A - 20p13 [CytoView hg38]
Mapping of homologs : NCBIFAM110A [Mapview hg19]  FAM110A [Mapview hg38]
OMIM611393   
Gene and transcription
Genbank (Entrez)AB196290 AK314165 AL530841 BC004222 BC012800
RefSeq transcript (Entrez)NM_001042353 NM_001289145 NM_001289146 NM_001289147 NM_031424 NM_207121
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM110A
Cluster EST : UnigeneHs.574822 [ NCBI ]
CGAP (NCI)Hs.574822
Alternative Splicing GalleryENSG00000125898
Gene ExpressionFAM110A [ NCBI-GEO ]   FAM110A [ EBI - ARRAY_EXPRESS ]   FAM110A [ SEEK ]   FAM110A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM110A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83541
GTEX Portal (Tissue expression)FAM110A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ89   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ89  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ89
Splice isoforms : SwissVarQ9BQ89
PhosPhoSitePlusQ9BQ89
Domains : Interpro (EBI)FAM110    FAM110_C    FAM110_N   
Domain families : Pfam (Sanger)FAM110_C (PF14160)    FAM110_N (PF14161)   
Domain families : Pfam (NCBI)pfam14160    pfam14161   
Conserved Domain (NCBI)FAM110A
DMDM Disease mutations83541
Blocks (Seattle)FAM110A
SuperfamilyQ9BQ89
Human Protein AtlasENSG00000125898
Peptide AtlasQ9BQ89
HPRD12775
IPIIPI00027758   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ89
IntAct (EBI)Q9BQ89
FunCoupENSG00000125898
BioGRIDFAM110A
STRING (EMBL)FAM110A
ZODIACFAM110A
Ontologies - Pathways
QuickGOQ9BQ89
Ontology : AmiGOspindle pole  protein binding  cytoplasm  microtubule organizing center  
Ontology : EGO-EBIspindle pole  protein binding  cytoplasm  microtubule organizing center  
NDEx NetworkFAM110A
Atlas of Cancer Signalling NetworkFAM110A
Wikipedia pathwaysFAM110A
Orthology - Evolution
OrthoDB83541
GeneTree (enSembl)ENSG00000125898
Phylogenetic Trees/Animal Genes : TreeFamFAM110A
HOVERGENQ9BQ89
HOGENOMQ9BQ89
Homologs : HomoloGeneFAM110A
Homology/Alignments : Family Browser (UCSC)FAM110A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM110A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM110A
dbVarFAM110A
ClinVarFAM110A
1000_GenomesFAM110A 
Exome Variant ServerFAM110A
ExAC (Exome Aggregation Consortium)FAM110A (select the gene name)
Genetic variants : HAPMAP83541
Genomic Variants (DGV)FAM110A [DGVbeta]
DECIPHERFAM110A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM110A 
Mutations
ICGC Data PortalFAM110A 
TCGA Data PortalFAM110A 
Broad Tumor PortalFAM110A
OASIS PortalFAM110A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM110A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM110A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM110A
DgiDB (Drug Gene Interaction Database)FAM110A
DoCM (Curated mutations)FAM110A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM110A (select a term)
intoGenFAM110A
Cancer3DFAM110A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611393   
Orphanet
MedgenFAM110A
Genetic Testing Registry FAM110A
NextProtQ9BQ89 [Medical]
TSGene83541
GENETestsFAM110A
Target ValidationFAM110A
Huge Navigator FAM110A [HugePedia]
snp3D : Map Gene to Disease83541
BioCentury BCIQFAM110A
ClinGenFAM110A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83541
Chemical/Pharm GKB GenePA162385650
Clinical trialFAM110A
Miscellaneous
canSAR (ICR)FAM110A (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM110A
EVEXFAM110A
GoPubMedFAM110A
iHOPFAM110A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:47:43 CEST 2017

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