Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM110D (family with sequence similarity 110, member D)

Identity

Alias_namesGRRP1
glycine/arginine rich protein 1
family with sequence similarity 110, member D
Alias_symbol (synonym)FLJ14050
Other alias
HGNC (Hugo) FAM110D
LocusID (NCBI) 79927
Atlas_Id 62992
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26485511 and ends at 26489119 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CDH23 (10q22.1) / FAM110D (1p36.11)CEP85 (1p36.11) / FAM110D (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM110D   25860
Cards
Entrez_Gene (NCBI)FAM110D  79927  family with sequence similarity 110, member D
AliasesGRRP1
GeneCards (Weizmann)FAM110D
Ensembl hg19 (Hinxton)ENSG00000197245 [Gene_View]  chr1:26485511-26489119 [Contig_View]  FAM110D [Vega]
Ensembl hg38 (Hinxton)ENSG00000197245 [Gene_View]  chr1:26485511-26489119 [Contig_View]  FAM110D [Vega]
ICGC DataPortalENSG00000197245
TCGA cBioPortalFAM110D
AceView (NCBI)FAM110D
Genatlas (Paris)FAM110D
WikiGenes79927
SOURCE (Princeton)FAM110D
Genetics Home Reference (NIH)FAM110D
Genomic and cartography
GoldenPath hg19 (UCSC)FAM110D  -     chr1:26485511-26489119 +  1p36.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM110D  -     1p36.11   [Description]    (hg38-Dec_2013)
EnsemblFAM110D - 1p36.11 [CytoView hg19]  FAM110D - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIFAM110D [Mapview hg19]  FAM110D [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024112 AK290715 AU119858 BC025658
RefSeq transcript (Entrez)NM_024869
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)FAM110D
Cluster EST : UnigeneHs.694119 [ NCBI ]
CGAP (NCI)Hs.694119
Alternative Splicing GalleryENSG00000197245
Gene ExpressionFAM110D [ NCBI-GEO ]   FAM110D [ EBI - ARRAY_EXPRESS ]   FAM110D [ SEEK ]   FAM110D [ MEM ]
Gene Expression Viewer (FireBrowse)FAM110D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79927
GTEX Portal (Tissue expression)FAM110D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAY7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAY7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAY7
Splice isoforms : SwissVarQ8TAY7
PhosPhoSitePlusQ8TAY7
Domains : Interpro (EBI)FAM110    FAM110_C    FAM110_N   
Domain families : Pfam (Sanger)FAM110_C (PF14160)    FAM110_N (PF14161)   
Domain families : Pfam (NCBI)pfam14160    pfam14161   
Conserved Domain (NCBI)FAM110D
DMDM Disease mutations79927
Blocks (Seattle)FAM110D
SuperfamilyQ8TAY7
Human Protein AtlasENSG00000197245
Peptide AtlasQ8TAY7
HPRD07848
IPIIPI00016384   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAY7
IntAct (EBI)Q8TAY7
FunCoupENSG00000197245
BioGRIDFAM110D
STRING (EMBL)FAM110D
ZODIACFAM110D
Ontologies - Pathways
QuickGOQ8TAY7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM110D
Atlas of Cancer Signalling NetworkFAM110D
Wikipedia pathwaysFAM110D
Orthology - Evolution
OrthoDB79927
GeneTree (enSembl)ENSG00000197245
Phylogenetic Trees/Animal Genes : TreeFamFAM110D
HOVERGENQ8TAY7
HOGENOMQ8TAY7
Homologs : HomoloGeneFAM110D
Homology/Alignments : Family Browser (UCSC)FAM110D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM110D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM110D
dbVarFAM110D
ClinVarFAM110D
1000_GenomesFAM110D 
Exome Variant ServerFAM110D
ExAC (Exome Aggregation Consortium)FAM110D (select the gene name)
Genetic variants : HAPMAP79927
Genomic Variants (DGV)FAM110D [DGVbeta]
DECIPHER (Syndromes)1:26485511-26489119  ENSG00000197245
CONAN: Copy Number AnalysisFAM110D 
Mutations
ICGC Data PortalFAM110D 
TCGA Data PortalFAM110D 
Broad Tumor PortalFAM110D
OASIS PortalFAM110D [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFAM110D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM110D
DgiDB (Drug Gene Interaction Database)FAM110D
DoCM (Curated mutations)FAM110D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM110D (select a term)
intoGenFAM110D
Cancer3DFAM110D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM110D
Genetic Testing Registry FAM110D
NextProtQ8TAY7 [Medical]
TSGene79927
GENETestsFAM110D
Huge Navigator FAM110D [HugePedia]
snp3D : Map Gene to Disease79927
BioCentury BCIQFAM110D
ClinGenFAM110D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79927
Chemical/Pharm GKB GenePA142671706
Clinical trialFAM110D
Miscellaneous
canSAR (ICR)FAM110D (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM110D
EVEXFAM110D
GoPubMedFAM110D
iHOPFAM110D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:03:25 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.