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FAM111A (family with sequence similarity 111 member A)

Identity

Alias_namesfamily with sequence similarity 111, member A
Alias_symbol (synonym)FLJ22794
KIAA1895
Other aliasGCLEB
KCS2
HGNC (Hugo) FAM111A
LocusID (NCBI) 63901
Atlas_Id 62993
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 59142746 and ends at 59155038 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EIF3D (22q12.3) / FAM111A (11q12.1)LCOR (10q24.1) / FAM111A (11q12.1)SLC25A3 (12q23.1) / FAM111A (11q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM111A   24725
Cards
Entrez_Gene (NCBI)FAM111A  63901  family with sequence similarity 111 member A
AliasesGCLEB; KCS2
GeneCards (Weizmann)FAM111A
Ensembl hg19 (Hinxton)ENSG00000166801 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166801 [Gene_View]  chr11:59142746-59155038 [Contig_View]  FAM111A [Vega]
ICGC DataPortalENSG00000166801
TCGA cBioPortalFAM111A
AceView (NCBI)FAM111A
Genatlas (Paris)FAM111A
WikiGenes63901
SOURCE (Princeton)FAM111A
Genetics Home Reference (NIH)FAM111A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM111A  -     chr11:59142746-59155038 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM111A  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblFAM111A - 11q12.1 [CytoView hg19]  FAM111A - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIFAM111A [Mapview hg19]  FAM111A [Mapview hg38]
OMIM127000   602361   615292   
Gene and transcription
Genbank (Entrez)AB067482 AK025319 AK026447 AK092061 AK092237
RefSeq transcript (Entrez)NM_001142519 NM_001142520 NM_001142521 NM_001312909 NM_001312910 NM_001312911 NM_022074 NM_198847
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM111A
Cluster EST : UnigeneHs.150651 [ NCBI ]
CGAP (NCI)Hs.150651
Alternative Splicing GalleryENSG00000166801
Gene ExpressionFAM111A [ NCBI-GEO ]   FAM111A [ EBI - ARRAY_EXPRESS ]   FAM111A [ SEEK ]   FAM111A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM111A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63901
GTEX Portal (Tissue expression)FAM111A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PZ2
Splice isoforms : SwissVarQ96PZ2
PhosPhoSitePlusQ96PZ2
Domains : Interpro (EBI)Peptidase_S1_PA   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM111A
DMDM Disease mutations63901
Blocks (Seattle)FAM111A
SuperfamilyQ96PZ2
Human Protein AtlasENSG00000166801
Peptide AtlasQ96PZ2
HPRD07015
IPIIPI00478616   IPI00984397   IPI00977603   
Protein Interaction databases
DIP (DOE-UCLA)Q96PZ2
IntAct (EBI)Q96PZ2
FunCoupENSG00000166801
BioGRIDFAM111A
STRING (EMBL)FAM111A
ZODIACFAM111A
Ontologies - Pathways
QuickGOQ96PZ2
Ontology : AmiGOchromatin  fibrillar center  protein binding  nucleus  cytoplasm  DNA replication  negative regulation of viral genome replication  defense response to virus  
Ontology : EGO-EBIchromatin  fibrillar center  protein binding  nucleus  cytoplasm  DNA replication  negative regulation of viral genome replication  defense response to virus  
NDEx NetworkFAM111A
Atlas of Cancer Signalling NetworkFAM111A
Wikipedia pathwaysFAM111A
Orthology - Evolution
OrthoDB63901
GeneTree (enSembl)ENSG00000166801
Phylogenetic Trees/Animal Genes : TreeFamFAM111A
HOVERGENQ96PZ2
HOGENOMQ96PZ2
Homologs : HomoloGeneFAM111A
Homology/Alignments : Family Browser (UCSC)FAM111A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM111A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM111A
dbVarFAM111A
ClinVarFAM111A
1000_GenomesFAM111A 
Exome Variant ServerFAM111A
ExAC (Exome Aggregation Consortium)FAM111A (select the gene name)
Genetic variants : HAPMAP63901
Genomic Variants (DGV)FAM111A [DGVbeta]
DECIPHERFAM111A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM111A 
Mutations
ICGC Data PortalFAM111A 
TCGA Data PortalFAM111A 
Broad Tumor PortalFAM111A
OASIS PortalFAM111A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM111A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM111A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM111A
DgiDB (Drug Gene Interaction Database)FAM111A
DoCM (Curated mutations)FAM111A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM111A (select a term)
intoGenFAM111A
Cancer3DFAM111A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM127000    602361    615292   
Orphanet2517    12262   
MedgenFAM111A
Genetic Testing Registry FAM111A
NextProtQ96PZ2 [Medical]
TSGene63901
GENETestsFAM111A
Target ValidationFAM111A
Huge Navigator FAM111A [HugePedia]
snp3D : Map Gene to Disease63901
BioCentury BCIQFAM111A
ClinGenFAM111A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63901
Chemical/Pharm GKB GenePA143485468
Clinical trialFAM111A
Miscellaneous
canSAR (ICR)FAM111A (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM111A
EVEXFAM111A
GoPubMedFAM111A
iHOPFAM111A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:32 CEST 2017

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