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FAM111B (family with sequence similarity 111 member B)

Identity

Alias_namesfamily with sequence similarity 111
Alias_symbol (synonym)CANP
Other aliasPOIKTMP
HGNC (Hugo) FAM111B
LocusID (NCBI) 374393
Atlas_Id 909
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 59107185 and ends at 59127416 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM111B (11q12.1) / GLYATL1 (11q12.1)FAM111B (11q12.1) / MS4A5 (11q12.2)FAM111B 11q12.1 / GLYATL1 11q12.1
FAM111B 11q12.1 / MS4A5 11q12.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM111B   24200
Cards
Entrez_Gene (NCBI)FAM111B  374393  family with sequence similarity 111 member B
AliasesCANP; POIKTMP
GeneCards (Weizmann)FAM111B
Ensembl hg19 (Hinxton)ENSG00000189057 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189057 [Gene_View]  chr11:59107185-59127416 [Contig_View]  FAM111B [Vega]
ICGC DataPortalENSG00000189057
TCGA cBioPortalFAM111B
AceView (NCBI)FAM111B
Genatlas (Paris)FAM111B
WikiGenes374393
SOURCE (Princeton)FAM111B
Genetics Home Reference (NIH)FAM111B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM111B  -     chr11:59107185-59127416 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM111B  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblFAM111B - 11q12.1 [CytoView hg19]  FAM111B - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIFAM111B [Mapview hg19]  FAM111B [Mapview hg38]
OMIM615584   615704   
Gene and transcription
Genbank (Entrez)AK303520 AK304258 AY457926 BC005998 BC062456
RefSeq transcript (Entrez)NM_001142703 NM_001142704 NM_198947
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM111B
Cluster EST : UnigeneHs.186579 [ NCBI ]
CGAP (NCI)Hs.186579
Alternative Splicing GalleryENSG00000189057
Gene ExpressionFAM111B [ NCBI-GEO ]   FAM111B [ EBI - ARRAY_EXPRESS ]   FAM111B [ SEEK ]   FAM111B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM111B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374393
GTEX Portal (Tissue expression)FAM111B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6SJ93   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6SJ93  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6SJ93
Splice isoforms : SwissVarQ6SJ93
PhosPhoSitePlusQ6SJ93
Domains : Interpro (EBI)Peptidase_S1_PA   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM111B
DMDM Disease mutations374393
Blocks (Seattle)FAM111B
SuperfamilyQ6SJ93
Human Protein AtlasENSG00000189057
Peptide AtlasQ6SJ93
HPRD07096
IPIIPI00375836   IPI00827905   IPI00983367   
Protein Interaction databases
DIP (DOE-UCLA)Q6SJ93
IntAct (EBI)Q6SJ93
FunCoupENSG00000189057
BioGRIDFAM111B
STRING (EMBL)FAM111B
ZODIACFAM111B
Ontologies - Pathways
QuickGOQ6SJ93
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM111B
Atlas of Cancer Signalling NetworkFAM111B
Wikipedia pathwaysFAM111B
Orthology - Evolution
OrthoDB374393
GeneTree (enSembl)ENSG00000189057
Phylogenetic Trees/Animal Genes : TreeFamFAM111B
HOVERGENQ6SJ93
HOGENOMQ6SJ93
Homologs : HomoloGeneFAM111B
Homology/Alignments : Family Browser (UCSC)FAM111B
Gene fusions - Rearrangements
Fusion : MitelmanFAM111B/GLYATL1 [11q12.1/11q12.1]  
Fusion : MitelmanFAM111B/MS4A5 [11q12.1/11q12.2]  [t(11;11)(q12;q12)]  
Fusion: TCGAFAM111B 11q12.1 GLYATL1 11q12.1 BRCA
Fusion: TCGAFAM111B 11q12.1 MS4A5 11q12.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM111B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM111B
dbVarFAM111B
ClinVarFAM111B
1000_GenomesFAM111B 
Exome Variant ServerFAM111B
ExAC (Exome Aggregation Consortium)FAM111B (select the gene name)
Genetic variants : HAPMAP374393
Genomic Variants (DGV)FAM111B [DGVbeta]
DECIPHERFAM111B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM111B 
Mutations
ICGC Data PortalFAM111B 
TCGA Data PortalFAM111B 
Broad Tumor PortalFAM111B
OASIS PortalFAM111B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM111B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM111B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM111B
DgiDB (Drug Gene Interaction Database)FAM111B
DoCM (Curated mutations)FAM111B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM111B (select a term)
intoGenFAM111B
Cancer3DFAM111B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615584    615704   
Orphanet18932   
MedgenFAM111B
Genetic Testing Registry FAM111B
NextProtQ6SJ93 [Medical]
TSGene374393
GENETestsFAM111B
Huge Navigator FAM111B [HugePedia]
snp3D : Map Gene to Disease374393
BioCentury BCIQFAM111B
ClinGenFAM111B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374393
Chemical/Pharm GKB GenePA143485469
Clinical trialFAM111B
Miscellaneous
canSAR (ICR)FAM111B (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM111B
EVEXFAM111B
GoPubMedFAM111B
iHOPFAM111B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:15:18 CEST 2017

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