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FAM114A1 (family with sequence similarity 114 member A1)

Identity

Alias_namesfamily with sequence similarity 114, member A1
Alias_symbol (synonym)Noxp20
Other alias
HGNC (Hugo) FAM114A1
LocusID (NCBI) 92689
Atlas_Id 62994
Location 4p14  [Link to chromosome band 4p14]
Location_base_pair Starts at 38867733 and ends at 38945744 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM114A1 (4p14) / EEPD1 (7p14.2)FAM114A1 (4p14) / FAM114A1 (4p14)FAM114A1 (4p14) / IQCE (7p22.3)
FAM114A1 (4p14) / NPAS3 (14q13.1)FAM114A1 (4p14) / QSOX1 (1q25.2)FAM114A1 (4p14) / TBC1D2B (15q24.3)
FAM114A1 IQCEFAM114A1 EEPD1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM114A1   25087
Cards
Entrez_Gene (NCBI)FAM114A1  92689  family with sequence similarity 114 member A1
AliasesNoxp20
GeneCards (Weizmann)FAM114A1
Ensembl hg19 (Hinxton)ENSG00000197712 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197712 [Gene_View]  chr4:38867733-38945744 [Contig_View]  FAM114A1 [Vega]
ICGC DataPortalENSG00000197712
TCGA cBioPortalFAM114A1
AceView (NCBI)FAM114A1
Genatlas (Paris)FAM114A1
WikiGenes92689
SOURCE (Princeton)FAM114A1
Genetics Home Reference (NIH)FAM114A1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM114A1  -     chr4:38867733-38945744 +  4p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM114A1  -     4p14   [Description]    (hg19-Feb_2009)
EnsemblFAM114A1 - 4p14 [CytoView hg19]  FAM114A1 - 4p14 [CytoView hg38]
Mapping of homologs : NCBIFAM114A1 [Mapview hg19]  FAM114A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI073679 AK057713 AK094179 AK292831 AK296859
RefSeq transcript (Entrez)NM_001330764 NM_001350631 NM_001350632 NM_001350633 NM_001350634 NM_001350635 NM_138389
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM114A1
Cluster EST : UnigeneHs.476517 [ NCBI ]
CGAP (NCI)Hs.476517
Alternative Splicing GalleryENSG00000197712
Gene ExpressionFAM114A1 [ NCBI-GEO ]   FAM114A1 [ EBI - ARRAY_EXPRESS ]   FAM114A1 [ SEEK ]   FAM114A1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM114A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92689
GTEX Portal (Tissue expression)FAM114A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWE2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWE2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWE2
Splice isoforms : SwissVarQ8IWE2
PhosPhoSitePlusQ8IWE2
Domains : Interpro (EBI)DUF719   
Domain families : Pfam (Sanger)DUF719 (PF05334)   
Domain families : Pfam (NCBI)pfam05334   
Conserved Domain (NCBI)FAM114A1
DMDM Disease mutations92689
Blocks (Seattle)FAM114A1
SuperfamilyQ8IWE2
Human Protein AtlasENSG00000197712
Peptide AtlasQ8IWE2
HPRD11282
IPIIPI00031670   IPI00968274   IPI00964122   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWE2
IntAct (EBI)Q8IWE2
FunCoupENSG00000197712
BioGRIDFAM114A1
STRING (EMBL)FAM114A1
ZODIACFAM114A1
Ontologies - Pathways
QuickGOQ8IWE2
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  Golgi apparatus  cytosol  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  Golgi apparatus  cytosol  
NDEx NetworkFAM114A1
Atlas of Cancer Signalling NetworkFAM114A1
Wikipedia pathwaysFAM114A1
Orthology - Evolution
OrthoDB92689
GeneTree (enSembl)ENSG00000197712
Phylogenetic Trees/Animal Genes : TreeFamFAM114A1
HOVERGENQ8IWE2
HOGENOMQ8IWE2
Homologs : HomoloGeneFAM114A1
Homology/Alignments : Family Browser (UCSC)FAM114A1
Gene fusions - Rearrangements
Fusion: TCGAFAM114A1 IQCE
Fusion: TCGAFAM114A1 EEPD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM114A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM114A1
dbVarFAM114A1
ClinVarFAM114A1
1000_GenomesFAM114A1 
Exome Variant ServerFAM114A1
ExAC (Exome Aggregation Consortium)FAM114A1 (select the gene name)
Genetic variants : HAPMAP92689
Genomic Variants (DGV)FAM114A1 [DGVbeta]
DECIPHERFAM114A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM114A1 
Mutations
ICGC Data PortalFAM114A1 
TCGA Data PortalFAM114A1 
Broad Tumor PortalFAM114A1
OASIS PortalFAM114A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM114A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM114A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM114A1
DgiDB (Drug Gene Interaction Database)FAM114A1
DoCM (Curated mutations)FAM114A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM114A1 (select a term)
intoGenFAM114A1
Cancer3DFAM114A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM114A1
Genetic Testing Registry FAM114A1
NextProtQ8IWE2 [Medical]
TSGene92689
GENETestsFAM114A1
Target ValidationFAM114A1
Huge Navigator FAM114A1 [HugePedia]
snp3D : Map Gene to Disease92689
BioCentury BCIQFAM114A1
ClinGenFAM114A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92689
Chemical/Pharm GKB GenePA162385681
Clinical trialFAM114A1
Miscellaneous
canSAR (ICR)FAM114A1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM114A1
EVEXFAM114A1
GoPubMedFAM114A1
iHOPFAM114A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:32 CEST 2017

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