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FAM114A2 (family with sequence similarity 114 member A2)

Identity

Alias_namesC5orf3
chromosome 5 open reading frame 3
family with sequence similarity 114, member A2
Alias_symbol (synonym)133K02
Other alias
HGNC (Hugo) FAM114A2
LocusID (NCBI) 10827
Atlas_Id 62995
Location 5q33.2  [Link to chromosome band 5q33]
Location_base_pair Starts at 153990131 and ends at 154038938 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BRAF (7q34) / FAM114A2 (5q33.2)FAM114A2 (5q33.2) / BRAF (7q34)FAM114A2 (5q33.2) / MRPL22 (5q33.2)
SMC6 (2p24.2) / FAM114A2 (5q33.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM114A2   1333
Cards
Entrez_Gene (NCBI)FAM114A2  10827  family with sequence similarity 114 member A2
Aliases133K02; C5orf3
GeneCards (Weizmann)FAM114A2
Ensembl hg19 (Hinxton)ENSG00000055147 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000055147 [Gene_View]  chr5:153990131-154038938 [Contig_View]  FAM114A2 [Vega]
ICGC DataPortalENSG00000055147
TCGA cBioPortalFAM114A2
AceView (NCBI)FAM114A2
Genatlas (Paris)FAM114A2
WikiGenes10827
SOURCE (Princeton)FAM114A2
Genetics Home Reference (NIH)FAM114A2
Genomic and cartography
GoldenPath hg38 (UCSC)FAM114A2  -     chr5:153990131-154038938 -  5q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM114A2  -     5q33.2   [Description]    (hg19-Feb_2009)
EnsemblFAM114A2 - 5q33.2 [CytoView hg19]  FAM114A2 - 5q33.2 [CytoView hg38]
Mapping of homologs : NCBIFAM114A2 [Mapview hg19]  FAM114A2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF159700 AK024664 AK095446 AK225821 AK298943
RefSeq transcript (Entrez)NM_001317993 NM_001317994 NM_001317995 NM_018691
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM114A2
Cluster EST : UnigeneHs.166551 [ NCBI ]
CGAP (NCI)Hs.166551
Alternative Splicing GalleryENSG00000055147
Gene ExpressionFAM114A2 [ NCBI-GEO ]   FAM114A2 [ EBI - ARRAY_EXPRESS ]   FAM114A2 [ SEEK ]   FAM114A2 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM114A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10827
GTEX Portal (Tissue expression)FAM114A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRY5
Splice isoforms : SwissVarQ9NRY5
PhosPhoSitePlusQ9NRY5
Domains : Interpro (EBI)DUF719   
Domain families : Pfam (Sanger)DUF719 (PF05334)   
Domain families : Pfam (NCBI)pfam05334   
Conserved Domain (NCBI)FAM114A2
DMDM Disease mutations10827
Blocks (Seattle)FAM114A2
SuperfamilyQ9NRY5
Human Protein AtlasENSG00000055147
Peptide AtlasQ9NRY5
HPRD12831
IPIIPI00329662   IPI00909576   IPI00940143   IPI00953191   IPI00976422   IPI00983476   IPI00976687   IPI00979492   IPI00984087   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRY5
IntAct (EBI)Q9NRY5
FunCoupENSG00000055147
BioGRIDFAM114A2
STRING (EMBL)FAM114A2
ZODIACFAM114A2
Ontologies - Pathways
QuickGOQ9NRY5
Ontology : AmiGOcellular_component  biological_process  purine nucleotide binding  
Ontology : EGO-EBIcellular_component  biological_process  purine nucleotide binding  
NDEx NetworkFAM114A2
Atlas of Cancer Signalling NetworkFAM114A2
Wikipedia pathwaysFAM114A2
Orthology - Evolution
OrthoDB10827
GeneTree (enSembl)ENSG00000055147
Phylogenetic Trees/Animal Genes : TreeFamFAM114A2
HOVERGENQ9NRY5
HOGENOMQ9NRY5
Homologs : HomoloGeneFAM114A2
Homology/Alignments : Family Browser (UCSC)FAM114A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM114A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM114A2
dbVarFAM114A2
ClinVarFAM114A2
1000_GenomesFAM114A2 
Exome Variant ServerFAM114A2
ExAC (Exome Aggregation Consortium)FAM114A2 (select the gene name)
Genetic variants : HAPMAP10827
Genomic Variants (DGV)FAM114A2 [DGVbeta]
DECIPHERFAM114A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM114A2 
Mutations
ICGC Data PortalFAM114A2 
TCGA Data PortalFAM114A2 
Broad Tumor PortalFAM114A2
OASIS PortalFAM114A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM114A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM114A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM114A2
DgiDB (Drug Gene Interaction Database)FAM114A2
DoCM (Curated mutations)FAM114A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM114A2 (select a term)
intoGenFAM114A2
Cancer3DFAM114A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM114A2
Genetic Testing Registry FAM114A2
NextProtQ9NRY5 [Medical]
TSGene10827
GENETestsFAM114A2
Target ValidationFAM114A2
Huge Navigator FAM114A2 [HugePedia]
snp3D : Map Gene to Disease10827
BioCentury BCIQFAM114A2
ClinGenFAM114A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10827
Chemical/Pharm GKB GenePA162385716
Clinical trialFAM114A2
Miscellaneous
canSAR (ICR)FAM114A2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM114A2
EVEXFAM114A2
GoPubMedFAM114A2
iHOPFAM114A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:47:44 CEST 2017

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