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FAM114A2 (family with sequence similarity 114 member A2)

Identity

Alias (NCBI)133K02
C5orf3
HGNC (Hugo) FAM114A2
HGNC Alias symb133K02
HGNC Previous nameC5orf3
HGNC Previous namechromosome 5 open reading frame 3
 family with sequence similarity 114, member A2
LocusID (NCBI) 10827
Atlas_Id 58222
Location 5q33.2  [Link to chromosome band 5q33]
Location_base_pair Starts at 153990148 and ends at 154038910 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BRAF (7q34) / FAM114A2 (5q33.2)FAM114A2 (5q33.2) / BRAF (7q34)FAM114A2 (5q33.2) / MRPL22 (5q33.2)
SMC6 (2p24.2) / FAM114A2 (5q33.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FAM114A2   1333
Cards
Entrez_Gene (NCBI)FAM114A2    family with sequence similarity 114 member A2
Aliases133K02; C5orf3
GeneCards (Weizmann)FAM114A2
Ensembl hg19 (Hinxton)ENSG00000055147 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000055147 [Gene_View]  ENSG00000055147 [Sequence]  chr5:153990148-154038910 [Contig_View]  FAM114A2 [Vega]
ICGC DataPortalENSG00000055147
TCGA cBioPortalFAM114A2
AceView (NCBI)FAM114A2
Genatlas (Paris)FAM114A2
SOURCE (Princeton)FAM114A2
Genetics Home Reference (NIH)FAM114A2
Genomic and cartography
GoldenPath hg38 (UCSC)FAM114A2  -     chr5:153990148-154038910 -  5q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM114A2  -     5q33.2   [Description]    (hg19-Feb_2009)
GoldenPathFAM114A2 - 5q33.2 [CytoView hg19]  FAM114A2 - 5q33.2 [CytoView hg38]
ImmunoBaseENSG00000055147
Genome Data Viewer NCBIFAM114A2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF159700 AK024664 AK095446 AK225821 AK298943
RefSeq transcript (Entrez)NM_001317993 NM_001317994 NM_001317995 NM_018691
Consensus coding sequences : CCDS (NCBI)FAM114A2
Gene ExpressionFAM114A2 [ NCBI-GEO ]   FAM114A2 [ EBI - ARRAY_EXPRESS ]   FAM114A2 [ SEEK ]   FAM114A2 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM114A2 [ Firebrowse - Broad ]
GenevisibleExpression of FAM114A2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10827
GTEX Portal (Tissue expression)FAM114A2
Human Protein AtlasENSG00000055147-FAM114A2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRY5
PhosPhoSitePlusQ9NRY5
Domains : Interpro (EBI)DUF719   
Domain families : Pfam (Sanger)DUF719 (PF05334)   
Domain families : Pfam (NCBI)pfam05334   
Conserved Domain (NCBI)FAM114A2
SuperfamilyQ9NRY5
AlphaFold pdb e-kbQ9NRY5   
Human Protein Atlas [tissue]ENSG00000055147-FAM114A2 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9NRY5
IntAct (EBI)Q9NRY5
BioGRIDFAM114A2
STRING (EMBL)FAM114A2
ZODIACFAM114A2
Ontologies - Pathways
QuickGOQ9NRY5
Ontology : AmiGOprotein binding  cellular_component  biological_process  purine nucleotide binding  
Ontology : EGO-EBIprotein binding  cellular_component  biological_process  purine nucleotide binding  
NDEx NetworkFAM114A2
Atlas of Cancer Signalling NetworkFAM114A2
Wikipedia pathwaysFAM114A2
Orthology - Evolution
OrthoDB10827
GeneTree (enSembl)ENSG00000055147
Phylogenetic Trees/Animal Genes : TreeFamFAM114A2
Homologs : HomoloGeneFAM114A2
Homology/Alignments : Family Browser (UCSC)FAM114A2
Gene fusions - Rearrangements
Fusion : QuiverFAM114A2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM114A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM114A2
dbVarFAM114A2
ClinVarFAM114A2
MonarchFAM114A2
1000_GenomesFAM114A2 
Exome Variant ServerFAM114A2
GNOMAD BrowserENSG00000055147
Varsome BrowserFAM114A2
ACMGFAM114A2 variants
VarityQ9NRY5
Genomic Variants (DGV)FAM114A2 [DGVbeta]
DECIPHERFAM114A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM114A2 
Mutations
ICGC Data PortalFAM114A2 
TCGA Data PortalFAM114A2 
Broad Tumor PortalFAM114A2
OASIS PortalFAM114A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM114A2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM114A2
Mutations and Diseases : HGMDFAM114A2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFAM114A2
DgiDB (Drug Gene Interaction Database)FAM114A2
DoCM (Curated mutations)FAM114A2
CIViC (Clinical Interpretations of Variants in Cancer)FAM114A2
Cancer3DFAM114A2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM114A2
MedgenFAM114A2
Genetic Testing Registry FAM114A2
NextProtQ9NRY5 [Medical]
GENETestsFAM114A2
Target ValidationFAM114A2
Huge Navigator FAM114A2 [HugePedia]
ClinGenFAM114A2
Clinical trials, drugs, therapy
MyCancerGenomeFAM114A2
Protein Interactions : CTDFAM114A2
PharosQ9NRY5
Clinical trialFAM114A2
Miscellaneous
canSAR (ICR)FAM114A2
HarmonizomeFAM114A2
DataMed IndexFAM114A2
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFAM114A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:08:49 CEST 2021

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