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FAM117A (family with sequence similarity 117, member A)

Identity

Alias_namesfamily with sequence similarity 117, member A
Other alias-
HGNC (Hugo) FAM117A
LocusID (NCBI) 81558
Atlas_Id 62999
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 47787687 and ends at 47841518 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BPTF (17q24.2) / FAM117A (17q21.33)FAM117A (17q21.33) / SLC35B1 (17q21.33)RUNX1 (21q22.12) / FAM117A (17q21.33)
SPAG9 (17q21.33) / FAM117A (17q21.33)SPOP (17q21.33) / FAM117A (17q21.33)BPTF FAM117A
SPAG9 FAM117ASPOP FAM117A

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM117A   24179
Cards
Entrez_Gene (NCBI)FAM117A  81558  family with sequence similarity 117, member A
Aliases
GeneCards (Weizmann)FAM117A
Ensembl hg19 (Hinxton)ENSG00000121104 [Gene_View]  chr17:47787687-47841518 [Contig_View]  FAM117A [Vega]
Ensembl hg38 (Hinxton)ENSG00000121104 [Gene_View]  chr17:47787687-47841518 [Contig_View]  FAM117A [Vega]
ICGC DataPortalENSG00000121104
TCGA cBioPortalFAM117A
AceView (NCBI)FAM117A
Genatlas (Paris)FAM117A
WikiGenes81558
SOURCE (Princeton)FAM117A
Genetics Home Reference (NIH)FAM117A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM117A  -     chr17:47787687-47841518 -  17q21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM117A  -     17q21.33   [Description]    (hg38-Dec_2013)
EnsemblFAM117A - 17q21.33 [CytoView hg19]  FAM117A - 17q21.33 [CytoView hg38]
Mapping of homologs : NCBIFAM117A [Mapview hg19]  FAM117A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF123073 AK302376 BC037572 BC065199
RefSeq transcript (Entrez)NM_030802
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)FAM117A
Cluster EST : UnigeneHs.514308 [ NCBI ]
CGAP (NCI)Hs.514308
Alternative Splicing GalleryENSG00000121104
Gene ExpressionFAM117A [ NCBI-GEO ]   FAM117A [ EBI - ARRAY_EXPRESS ]   FAM117A [ SEEK ]   FAM117A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM117A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81558
GTEX Portal (Tissue expression)FAM117A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C073   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C073  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C073
Splice isoforms : SwissVarQ9C073
PhosPhoSitePlusQ9C073
Domains : Interpro (EBI)Glcci1/FAM117   
Domain families : Pfam (Sanger)FAM117 (PF15388)   
Domain families : Pfam (NCBI)pfam15388   
Conserved Domain (NCBI)FAM117A
DMDM Disease mutations81558
Blocks (Seattle)FAM117A
SuperfamilyQ9C073
Human Protein AtlasENSG00000121104
Peptide AtlasQ9C073
HPRD17432
IPIIPI00006580   IPI00965923   IPI00966698   
Protein Interaction databases
DIP (DOE-UCLA)Q9C073
IntAct (EBI)Q9C073
FunCoupENSG00000121104
BioGRIDFAM117A
STRING (EMBL)FAM117A
ZODIACFAM117A
Ontologies - Pathways
QuickGOQ9C073
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM117A
Atlas of Cancer Signalling NetworkFAM117A
Wikipedia pathwaysFAM117A
Orthology - Evolution
OrthoDB81558
GeneTree (enSembl)ENSG00000121104
Phylogenetic Trees/Animal Genes : TreeFamFAM117A
HOVERGENQ9C073
HOGENOMQ9C073
Homologs : HomoloGeneFAM117A
Homology/Alignments : Family Browser (UCSC)FAM117A
Gene fusions - Rearrangements
Fusion: TCGABPTF FAM117A
Fusion: TCGASPAG9 FAM117A
Fusion: TCGASPOP FAM117A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM117A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM117A
dbVarFAM117A
ClinVarFAM117A
1000_GenomesFAM117A 
Exome Variant ServerFAM117A
ExAC (Exome Aggregation Consortium)FAM117A (select the gene name)
Genetic variants : HAPMAP81558
Genomic Variants (DGV)FAM117A [DGVbeta]
DECIPHER (Syndromes)17:47787687-47841518  ENSG00000121104
CONAN: Copy Number AnalysisFAM117A 
Mutations
ICGC Data PortalFAM117A 
TCGA Data PortalFAM117A 
Broad Tumor PortalFAM117A
OASIS PortalFAM117A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM117A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM117A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM117A
DgiDB (Drug Gene Interaction Database)FAM117A
DoCM (Curated mutations)FAM117A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM117A (select a term)
intoGenFAM117A
Cancer3DFAM117A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM117A
Genetic Testing Registry FAM117A
NextProtQ9C073 [Medical]
TSGene81558
GENETestsFAM117A
Huge Navigator FAM117A [HugePedia]
snp3D : Map Gene to Disease81558
BioCentury BCIQFAM117A
ClinGenFAM117A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81558
Chemical/Pharm GKB GenePA145008393
Clinical trialFAM117A
Miscellaneous
canSAR (ICR)FAM117A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM117A
EVEXFAM117A
GoPubMedFAM117A
iHOPFAM117A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:26 CET 2017

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