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FAM118A (family with sequence similarity 118 member A)

Identity

Alias_namesC22orf8
chromosome 22 open reading frame 8
family with sequence similarity 118, member A
Alias_symbol (synonym)FLJ20635
bK268H5.C22.4
Other alias
HGNC (Hugo) FAM118A
LocusID (NCBI) 55007
Atlas_Id 63000
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 45308960 and ends at 45341955 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM118A (22q13.31) / ESPL1 (12q13.13)FAM118A (22q13.31) / SETDB1 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM118A   1313
Cards
Entrez_Gene (NCBI)FAM118A  55007  family with sequence similarity 118 member A
AliasesC22orf8
GeneCards (Weizmann)FAM118A
Ensembl hg19 (Hinxton)ENSG00000100376 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100376 [Gene_View]  chr22:45308960-45341955 [Contig_View]  FAM118A [Vega]
ICGC DataPortalENSG00000100376
TCGA cBioPortalFAM118A
AceView (NCBI)FAM118A
Genatlas (Paris)FAM118A
WikiGenes55007
SOURCE (Princeton)FAM118A
Genetics Home Reference (NIH)FAM118A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM118A  -     chr22:45308960-45341955 +  22q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM118A  -     22q13.31   [Description]    (hg19-Feb_2009)
EnsemblFAM118A - 22q13.31 [CytoView hg19]  FAM118A - 22q13.31 [CytoView hg38]
Mapping of homologs : NCBIFAM118A [Mapview hg19]  FAM118A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000642 AK026239 AK125027 AK302205 AW206534
RefSeq transcript (Entrez)NM_001104595 NM_001349913 NM_001349914 NM_001349915 NM_001349916 NM_017911
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM118A
Cluster EST : UnigeneHs.265018 [ NCBI ]
CGAP (NCI)Hs.265018
Alternative Splicing GalleryENSG00000100376
Gene ExpressionFAM118A [ NCBI-GEO ]   FAM118A [ EBI - ARRAY_EXPRESS ]   FAM118A [ SEEK ]   FAM118A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM118A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55007
GTEX Portal (Tissue expression)FAM118A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWS6
Splice isoforms : SwissVarQ9NWS6
PhosPhoSitePlusQ9NWS6
Domains : Interpro (EBI)FAM118A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM118A
DMDM Disease mutations55007
Blocks (Seattle)FAM118A
SuperfamilyQ9NWS6
Human Protein AtlasENSG00000100376
Peptide AtlasQ9NWS6
HPRD07936
IPIIPI00304214   IPI01013989   IPI00889680   IPI00893394   IPI00893074   IPI00893478   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWS6
IntAct (EBI)Q9NWS6
FunCoupENSG00000100376
BioGRIDFAM118A
STRING (EMBL)FAM118A
ZODIACFAM118A
Ontologies - Pathways
QuickGOQ9NWS6
Ontology : AmiGOprotein binding  integral component of membrane  identical protein binding  
Ontology : EGO-EBIprotein binding  integral component of membrane  identical protein binding  
NDEx NetworkFAM118A
Atlas of Cancer Signalling NetworkFAM118A
Wikipedia pathwaysFAM118A
Orthology - Evolution
OrthoDB55007
GeneTree (enSembl)ENSG00000100376
Phylogenetic Trees/Animal Genes : TreeFamFAM118A
HOVERGENQ9NWS6
HOGENOMQ9NWS6
Homologs : HomoloGeneFAM118A
Homology/Alignments : Family Browser (UCSC)FAM118A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM118A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM118A
dbVarFAM118A
ClinVarFAM118A
1000_GenomesFAM118A 
Exome Variant ServerFAM118A
ExAC (Exome Aggregation Consortium)FAM118A (select the gene name)
Genetic variants : HAPMAP55007
Genomic Variants (DGV)FAM118A [DGVbeta]
DECIPHERFAM118A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM118A 
Mutations
ICGC Data PortalFAM118A 
TCGA Data PortalFAM118A 
Broad Tumor PortalFAM118A
OASIS PortalFAM118A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM118A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM118A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM118A
DgiDB (Drug Gene Interaction Database)FAM118A
DoCM (Curated mutations)FAM118A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM118A (select a term)
intoGenFAM118A
Cancer3DFAM118A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM118A
Genetic Testing Registry FAM118A
NextProtQ9NWS6 [Medical]
TSGene55007
GENETestsFAM118A
Huge Navigator FAM118A [HugePedia]
snp3D : Map Gene to Disease55007
BioCentury BCIQFAM118A
ClinGenFAM118A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55007
Chemical/Pharm GKB GenePA25890
Clinical trialFAM118A
Miscellaneous
canSAR (ICR)FAM118A (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM118A
EVEXFAM118A
GoPubMedFAM118A
iHOPFAM118A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:10:29 CEST 2017

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