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FAM118B (family with sequence similarity 118 member B)

Identity

Alias_namesfamily with sequence similarity 118, member B
Alias_symbol (synonym)FLJ21103
Other alias-
HGNC (Hugo) FAM118B
LocusID (NCBI) 79607
Atlas_Id 63001
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 126211724 and ends at 126262987 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM118B   26110
Cards
Entrez_Gene (NCBI)FAM118B  79607  family with sequence similarity 118 member B
Aliases
GeneCards (Weizmann)FAM118B
Ensembl hg19 (Hinxton)ENSG00000197798 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197798 [Gene_View]  chr11:126211724-126262987 [Contig_View]  FAM118B [Vega]
ICGC DataPortalENSG00000197798
TCGA cBioPortalFAM118B
AceView (NCBI)FAM118B
Genatlas (Paris)FAM118B
WikiGenes79607
SOURCE (Princeton)FAM118B
Genetics Home Reference (NIH)FAM118B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM118B  -     chr11:126211724-126262987 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM118B  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblFAM118B - 11q24.2 [CytoView hg19]  FAM118B - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIFAM118B [Mapview hg19]  FAM118B [Mapview hg38]
OMIM616587   
Gene and transcription
Genbank (Entrez)AK024756 AK225081 AK315615 BC001340 BC001647
RefSeq transcript (Entrez)NM_001330446 NM_024556
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM118B
Cluster EST : UnigeneHs.276315 [ NCBI ]
CGAP (NCI)Hs.276315
Alternative Splicing GalleryENSG00000197798
Gene ExpressionFAM118B [ NCBI-GEO ]   FAM118B [ EBI - ARRAY_EXPRESS ]   FAM118B [ SEEK ]   FAM118B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM118B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79607
GTEX Portal (Tissue expression)FAM118B
Human Protein AtlasENSG00000197798-FAM118B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BPY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BPY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BPY3
Splice isoforms : SwissVarQ9BPY3
PhosPhoSitePlusQ9BPY3
Domains : Interpro (EBI)FAM118B   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM118B
DMDM Disease mutations79607
Blocks (Seattle)FAM118B
SuperfamilyQ9BPY3
Human Protein Atlas [tissue]ENSG00000197798-FAM118B [tissue]
Peptide AtlasQ9BPY3
HPRD07952
IPIIPI00002240   IPI00975548   IPI00979313   IPI00983496   IPI00977428   IPI00978669   
Protein Interaction databases
DIP (DOE-UCLA)Q9BPY3
IntAct (EBI)Q9BPY3
FunCoupENSG00000197798
BioGRIDFAM118B
STRING (EMBL)FAM118B
ZODIACFAM118B
Ontologies - Pathways
QuickGOQ9BPY3
Ontology : AmiGOprotein binding  Cajal body  Cajal body organization  
Ontology : EGO-EBIprotein binding  Cajal body  Cajal body organization  
NDEx NetworkFAM118B
Atlas of Cancer Signalling NetworkFAM118B
Wikipedia pathwaysFAM118B
Orthology - Evolution
OrthoDB79607
GeneTree (enSembl)ENSG00000197798
Phylogenetic Trees/Animal Genes : TreeFamFAM118B
HOVERGENQ9BPY3
HOGENOMQ9BPY3
Homologs : HomoloGeneFAM118B
Homology/Alignments : Family Browser (UCSC)FAM118B
Gene fusions - Rearrangements
Fusion: Tumor Portal FAM118B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM118B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM118B
dbVarFAM118B
ClinVarFAM118B
1000_GenomesFAM118B 
Exome Variant ServerFAM118B
ExAC (Exome Aggregation Consortium)ENSG00000197798
GNOMAD BrowserENSG00000197798
Genetic variants : HAPMAP79607
Genomic Variants (DGV)FAM118B [DGVbeta]
DECIPHERFAM118B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM118B 
Mutations
ICGC Data PortalFAM118B 
TCGA Data PortalFAM118B 
Broad Tumor PortalFAM118B
OASIS PortalFAM118B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM118B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM118B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM118B
DgiDB (Drug Gene Interaction Database)FAM118B
DoCM (Curated mutations)FAM118B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM118B (select a term)
intoGenFAM118B
Cancer3DFAM118B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616587   
Orphanet
MedgenFAM118B
Genetic Testing Registry FAM118B
NextProtQ9BPY3 [Medical]
TSGene79607
GENETestsFAM118B
Target ValidationFAM118B
Huge Navigator FAM118B [HugePedia]
snp3D : Map Gene to Disease79607
BioCentury BCIQFAM118B
ClinGenFAM118B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79607
Chemical/Pharm GKB GenePA145008413
Clinical trialFAM118B
Miscellaneous
canSAR (ICR)FAM118B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM118B
EVEXFAM118B
GoPubMedFAM118B
iHOPFAM118B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:46:24 CET 2017

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