Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM120A (family with sequence similarity 120A)

Identity

Alias_namesC9orf10
chromosome 9 open reading frame 10
Alias_symbol (synonym)KIAA0183
OSSA
Other aliasHBVPTPAP
HGNC (Hugo) FAM120A
LocusID (NCBI) 23196
Atlas_Id 50866
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 93451696 and ends at 93566115 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DHRS7 (14q23.1) / FAM120A (9q22.31)FAM120A (9q22.31) / EIF4A1 (17p13.1)FAM120A (9q22.31) / FAM120A (9q22.31)
FAM120A (9q22.31) / FGD3 (9q22.31)FAM120A (9q22.31) / MT2A (16q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM120A   13247
Cards
Entrez_Gene (NCBI)FAM120A  23196  family with sequence similarity 120A
AliasesC9orf10; HBVPTPAP; OSSA
GeneCards (Weizmann)FAM120A
Ensembl hg19 (Hinxton)ENSG00000048828 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000048828 [Gene_View]  chr9:93451696-93566115 [Contig_View]  FAM120A [Vega]
ICGC DataPortalENSG00000048828
TCGA cBioPortalFAM120A
AceView (NCBI)FAM120A
Genatlas (Paris)FAM120A
WikiGenes23196
SOURCE (Princeton)FAM120A
Genetics Home Reference (NIH)FAM120A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM120A  -     chr9:93451696-93566115 +  9q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM120A  -     9q22.31   [Description]    (hg19-Feb_2009)
EnsemblFAM120A - 9q22.31 [CytoView hg19]  FAM120A - 9q22.31 [CytoView hg38]
Mapping of homologs : NCBIFAM120A [Mapview hg19]  FAM120A [Mapview hg38]
OMIM612265   
Gene and transcription
Genbank (Entrez)AF055017 AF214737 AF214738 AK091785 AK096349
RefSeq transcript (Entrez)NM_001286722 NM_001286723 NM_001286724 NM_014612
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM120A
Cluster EST : UnigeneHs.707324 [ NCBI ]
CGAP (NCI)Hs.707324
Alternative Splicing GalleryENSG00000048828
Gene ExpressionFAM120A [ NCBI-GEO ]   FAM120A [ EBI - ARRAY_EXPRESS ]   FAM120A [ SEEK ]   FAM120A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM120A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23196
GTEX Portal (Tissue expression)FAM120A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZB2
Splice isoforms : SwissVarQ9NZB2
PhosPhoSitePlusQ9NZB2
Domains : Interpro (EBI)Coact_PPARg    Coact_PPARg-like_1    PIN_domain-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM120A
DMDM Disease mutations23196
Blocks (Seattle)FAM120A
SuperfamilyQ9NZB2
Human Protein AtlasENSG00000048828
Peptide AtlasQ9NZB2
HPRD12928
IPIIPI00472054   IPI00220935   IPI00039626   IPI00719085   IPI00384265   IPI00978492   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZB2
IntAct (EBI)Q9NZB2
FunCoupENSG00000048828
BioGRIDFAM120A
STRING (EMBL)FAM120A
ZODIACFAM120A
Ontologies - Pathways
QuickGOQ9NZB2
Ontology : AmiGORNA binding  nucleus  cytosol  plasma membrane  membrane  
Ontology : EGO-EBIRNA binding  nucleus  cytosol  plasma membrane  membrane  
NDEx NetworkFAM120A
Atlas of Cancer Signalling NetworkFAM120A
Wikipedia pathwaysFAM120A
Orthology - Evolution
OrthoDB23196
GeneTree (enSembl)ENSG00000048828
Phylogenetic Trees/Animal Genes : TreeFamFAM120A
HOVERGENQ9NZB2
HOGENOMQ9NZB2
Homologs : HomoloGeneFAM120A
Homology/Alignments : Family Browser (UCSC)FAM120A
Gene fusions - Rearrangements
Fusion Cancer (Beijing)DHRS7 [14q23.1]  -  FAM120A [9q22.31]  [FUSC004633]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM120A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM120A
dbVarFAM120A
ClinVarFAM120A
1000_GenomesFAM120A 
Exome Variant ServerFAM120A
ExAC (Exome Aggregation Consortium)FAM120A (select the gene name)
Genetic variants : HAPMAP23196
Genomic Variants (DGV)FAM120A [DGVbeta]
DECIPHERFAM120A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM120A 
Mutations
ICGC Data PortalFAM120A 
TCGA Data PortalFAM120A 
Broad Tumor PortalFAM120A
OASIS PortalFAM120A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM120A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM120A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM120A
DgiDB (Drug Gene Interaction Database)FAM120A
DoCM (Curated mutations)FAM120A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM120A (select a term)
intoGenFAM120A
Cancer3DFAM120A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612265   
Orphanet
MedgenFAM120A
Genetic Testing Registry FAM120A
NextProtQ9NZB2 [Medical]
TSGene23196
GENETestsFAM120A
Target ValidationFAM120A
Huge Navigator FAM120A [HugePedia]
snp3D : Map Gene to Disease23196
BioCentury BCIQFAM120A
ClinGenFAM120A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23196
Chemical/Pharm GKB GenePA134954136
Clinical trialFAM120A
Miscellaneous
canSAR (ICR)FAM120A (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM120A
EVEXFAM120A
GoPubMedFAM120A
iHOPFAM120A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:00:49 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.