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FAM120AOS (family with sequence similarity 120A opposite strand)

Identity

Alias_namesC9orf10OS
chromosome 9 open reading frame 10 opposite strand
Other alias
HGNC (Hugo) FAM120AOS
LocusID (NCBI) 158293
Atlas_Id 63002
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 93446500 and ends at 93451604 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM120AOS (9q22.31) / CRCP (7q11.21)FAM120AOS (9q22.31) / HAVCR2 (5q33.3)FAM120AOS (9q22.31) / PLEC (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM120AOS   23389
Cards
Entrez_Gene (NCBI)FAM120AOS  158293  family with sequence similarity 120A opposite strand
AliasesC9orf10OS
GeneCards (Weizmann)FAM120AOS
Ensembl hg19 (Hinxton)ENSG00000188938 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188938 [Gene_View]  chr9:93446500-93451604 [Contig_View]  FAM120AOS [Vega]
ICGC DataPortalENSG00000188938
TCGA cBioPortalFAM120AOS
AceView (NCBI)FAM120AOS
Genatlas (Paris)FAM120AOS
WikiGenes158293
SOURCE (Princeton)FAM120AOS
Genetics Home Reference (NIH)FAM120AOS
Genomic and cartography
GoldenPath hg38 (UCSC)FAM120AOS  -     chr9:93446500-93451604 -  9q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM120AOS  -     9q22.31   [Description]    (hg19-Feb_2009)
EnsemblFAM120AOS - 9q22.31 [CytoView hg19]  FAM120AOS - 9q22.31 [CytoView hg38]
Mapping of homologs : NCBIFAM120AOS [Mapview hg19]  FAM120AOS [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056096 AK093641 AK309269 AW016692 BC015241
RefSeq transcript (Entrez)NM_001322224 NM_198841
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM120AOS
Cluster EST : UnigeneHs.709859 [ NCBI ]
CGAP (NCI)Hs.709859
Alternative Splicing GalleryENSG00000188938
Gene ExpressionFAM120AOS [ NCBI-GEO ]   FAM120AOS [ EBI - ARRAY_EXPRESS ]   FAM120AOS [ SEEK ]   FAM120AOS [ MEM ]
Gene Expression Viewer (FireBrowse)FAM120AOS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158293
GTEX Portal (Tissue expression)FAM120AOS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T036   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T036  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T036
Splice isoforms : SwissVarQ5T036
PhosPhoSitePlusQ5T036
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM120AOS
DMDM Disease mutations158293
Blocks (Seattle)FAM120AOS
SuperfamilyQ5T036
Human Protein AtlasENSG00000188938
Peptide AtlasQ5T036
HPRD12931
IPIIPI00747666   IPI00644899   IPI00514394   IPI00514734   IPI00974310   
Protein Interaction databases
DIP (DOE-UCLA)Q5T036
IntAct (EBI)Q5T036
FunCoupENSG00000188938
BioGRIDFAM120AOS
STRING (EMBL)FAM120AOS
ZODIACFAM120AOS
Ontologies - Pathways
QuickGOQ5T036
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM120AOS
Atlas of Cancer Signalling NetworkFAM120AOS
Wikipedia pathwaysFAM120AOS
Orthology - Evolution
OrthoDB158293
GeneTree (enSembl)ENSG00000188938
Phylogenetic Trees/Animal Genes : TreeFamFAM120AOS
HOVERGENQ5T036
HOGENOMQ5T036
Homologs : HomoloGeneFAM120AOS
Homology/Alignments : Family Browser (UCSC)FAM120AOS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM120AOS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM120AOS
dbVarFAM120AOS
ClinVarFAM120AOS
1000_GenomesFAM120AOS 
Exome Variant ServerFAM120AOS
ExAC (Exome Aggregation Consortium)FAM120AOS (select the gene name)
Genetic variants : HAPMAP158293
Genomic Variants (DGV)FAM120AOS [DGVbeta]
DECIPHERFAM120AOS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM120AOS 
Mutations
ICGC Data PortalFAM120AOS 
TCGA Data PortalFAM120AOS 
Broad Tumor PortalFAM120AOS
OASIS PortalFAM120AOS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM120AOS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM120AOS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM120AOS
DgiDB (Drug Gene Interaction Database)FAM120AOS
DoCM (Curated mutations)FAM120AOS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM120AOS (select a term)
intoGenFAM120AOS
Cancer3DFAM120AOS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM120AOS
Genetic Testing Registry FAM120AOS
NextProtQ5T036 [Medical]
TSGene158293
GENETestsFAM120AOS
Target ValidationFAM120AOS
Huge Navigator FAM120AOS [HugePedia]
snp3D : Map Gene to Disease158293
BioCentury BCIQFAM120AOS
ClinGenFAM120AOS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158293
Chemical/Pharm GKB GenePA134893278
Clinical trialFAM120AOS
Miscellaneous
canSAR (ICR)FAM120AOS (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM120AOS
EVEXFAM120AOS
GoPubMedFAM120AOS
iHOPFAM120AOS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:47:45 CEST 2017

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