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FAM120B (family with sequence similarity 120B)

Identity

Alias_namesKIAA1838
KIAA1838
Alias_symbol (synonym)PGCC1
CCPG
Other aliasdJ894D12.1
HGNC (Hugo) FAM120B
LocusID (NCBI) 84498
Atlas_Id 63003
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 170290703 and ends at 170407071 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM120B (6q27) / GLTSCR2 (19q13.33)FAM120B (6q27) / SYN1 (Xp11.23)ZNF736 (7q11.21) / FAM120B (6q27)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM120B   21109
Cards
Entrez_Gene (NCBI)FAM120B  84498  family with sequence similarity 120B
AliasesCCPG; KIAA1838; PGCC1; dJ894D12.1
GeneCards (Weizmann)FAM120B
Ensembl hg19 (Hinxton)ENSG00000112584 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112584 [Gene_View]  ENSG00000112584 [Sequence]  chr6:170290703-170407071 [Contig_View]  FAM120B [Vega]
ICGC DataPortalENSG00000112584
TCGA cBioPortalFAM120B
AceView (NCBI)FAM120B
Genatlas (Paris)FAM120B
WikiGenes84498
SOURCE (Princeton)FAM120B
Genetics Home Reference (NIH)FAM120B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM120B  -     chr6:170290703-170407071 +  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM120B  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblFAM120B - 6q27 [CytoView hg19]  FAM120B - 6q27 [CytoView hg38]
Mapping of homologs : NCBIFAM120B [Mapview hg19]  FAM120B [Mapview hg38]
OMIM612266   
Gene and transcription
Genbank (Entrez)AB058741 AJ420589 AK056435 AK294415 AK296730
RefSeq transcript (Entrez)NM_001286379 NM_001286380 NM_001286381 NM_032448
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_187553
Consensus coding sequences : CCDS (NCBI)FAM120B
Cluster EST : UnigeneHs.369522 [ NCBI ]
CGAP (NCI)Hs.369522
Alternative Splicing GalleryENSG00000112584
Gene ExpressionFAM120B [ NCBI-GEO ]   FAM120B [ EBI - ARRAY_EXPRESS ]   FAM120B [ SEEK ]   FAM120B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM120B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84498
GTEX Portal (Tissue expression)FAM120B
Human Protein AtlasENSG00000112584-FAM120B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EK7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EK7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EK7
Splice isoforms : SwissVarQ96EK7
PhosPhoSitePlusQ96EK7
Domains : Interpro (EBI)Coact_PPARg    PIN_domain-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM120B
DMDM Disease mutations84498
Blocks (Seattle)FAM120B
SuperfamilyQ96EK7
Human Protein Atlas [tissue]ENSG00000112584-FAM120B [tissue]
Peptide AtlasQ96EK7
HPRD11165
IPIIPI01010605   IPI01016009   IPI00335946   IPI00894229   
Protein Interaction databases
DIP (DOE-UCLA)Q96EK7
IntAct (EBI)Q96EK7
FunCoupENSG00000112584
BioGRIDFAM120B
STRING (EMBL)FAM120B
ZODIACFAM120B
Ontologies - Pathways
QuickGOQ96EK7
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  peroxisome proliferator activated receptor signaling pathway  fat cell differentiation  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  peroxisome proliferator activated receptor signaling pathway  fat cell differentiation  
NDEx NetworkFAM120B
Atlas of Cancer Signalling NetworkFAM120B
Wikipedia pathwaysFAM120B
Orthology - Evolution
OrthoDB84498
GeneTree (enSembl)ENSG00000112584
Phylogenetic Trees/Animal Genes : TreeFamFAM120B
HOVERGENQ96EK7
HOGENOMQ96EK7
Homologs : HomoloGeneFAM120B
Homology/Alignments : Family Browser (UCSC)FAM120B
Gene fusions - Rearrangements
Fusion : QuiverFAM120B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM120B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM120B
dbVarFAM120B
ClinVarFAM120B
1000_GenomesFAM120B 
Exome Variant ServerFAM120B
ExAC (Exome Aggregation Consortium)ENSG00000112584
GNOMAD BrowserENSG00000112584
Varsome BrowserFAM120B
Genetic variants : HAPMAP84498
Genomic Variants (DGV)FAM120B [DGVbeta]
DECIPHERFAM120B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM120B 
Mutations
ICGC Data PortalFAM120B 
TCGA Data PortalFAM120B 
Broad Tumor PortalFAM120B
OASIS PortalFAM120B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM120B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM120B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM120B
DgiDB (Drug Gene Interaction Database)FAM120B
DoCM (Curated mutations)FAM120B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM120B (select a term)
intoGenFAM120B
Cancer3DFAM120B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612266   
Orphanet
DisGeNETFAM120B
MedgenFAM120B
Genetic Testing Registry FAM120B
NextProtQ96EK7 [Medical]
TSGene84498
GENETestsFAM120B
Target ValidationFAM120B
Huge Navigator FAM120B [HugePedia]
snp3D : Map Gene to Disease84498
BioCentury BCIQFAM120B
ClinGenFAM120B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84498
Chemical/Pharm GKB GenePA134920525
Clinical trialFAM120B
Miscellaneous
canSAR (ICR)FAM120B (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM120B
EVEXFAM120B
GoPubMedFAM120B
iHOPFAM120B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:44:34 CEST 2018

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