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FAM120C (family with sequence similarity 120C)

Identity

Alias_namesCXorf17
chromosome X open reading frame 17
Alias_symbol (synonym)ORF34
FLJ20506
Other alias
HGNC (Hugo) FAM120C
LocusID (NCBI) 54954
Atlas_Id 63004
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 54068324 and ends at 54183281 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM120C   16949
Cards
Entrez_Gene (NCBI)FAM120C  54954  family with sequence similarity 120C
AliasesCXorf17; ORF34
GeneCards (Weizmann)FAM120C
Ensembl hg19 (Hinxton)ENSG00000184083 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184083 [Gene_View]  chrX:54068324-54183281 [Contig_View]  FAM120C [Vega]
ICGC DataPortalENSG00000184083
TCGA cBioPortalFAM120C
AceView (NCBI)FAM120C
Genatlas (Paris)FAM120C
WikiGenes54954
SOURCE (Princeton)FAM120C
Genetics Home Reference (NIH)FAM120C
Genomic and cartography
GoldenPath hg38 (UCSC)FAM120C  -     chrX:54068324-54183281 -  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM120C  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblFAM120C - Xp11.22 [CytoView hg19]  FAM120C - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBIFAM120C [Mapview hg19]  FAM120C [Mapview hg38]
OMIM300741   
Gene and transcription
Genbank (Entrez)AK000513 AK125664 AY121803 AY150025 BC016138
RefSeq transcript (Entrez)NM_001300788 NM_017848 NM_198456
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM120C
Cluster EST : UnigeneHs.86045 [ NCBI ]
CGAP (NCI)Hs.86045
Alternative Splicing GalleryENSG00000184083
Gene ExpressionFAM120C [ NCBI-GEO ]   FAM120C [ EBI - ARRAY_EXPRESS ]   FAM120C [ SEEK ]   FAM120C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM120C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54954
GTEX Portal (Tissue expression)FAM120C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX05   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX05  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX05
Splice isoforms : SwissVarQ9NX05
PhosPhoSitePlusQ9NX05
Domains : Interpro (EBI)Coact_PPARg    Coact_PPARg-like_2    PIN_domain-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM120C
DMDM Disease mutations54954
Blocks (Seattle)FAM120C
SuperfamilyQ9NX05
Human Protein AtlasENSG00000184083
Peptide AtlasQ9NX05
HPRD06480
IPIIPI00394751   IPI00413055   IPI00944927   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX05
IntAct (EBI)Q9NX05
FunCoupENSG00000184083
BioGRIDFAM120C
STRING (EMBL)FAM120C
ZODIACFAM120C
Ontologies - Pathways
QuickGOQ9NX05
Ontology : AmiGORNA binding  nucleus  
Ontology : EGO-EBIRNA binding  nucleus  
NDEx NetworkFAM120C
Atlas of Cancer Signalling NetworkFAM120C
Wikipedia pathwaysFAM120C
Orthology - Evolution
OrthoDB54954
GeneTree (enSembl)ENSG00000184083
Phylogenetic Trees/Animal Genes : TreeFamFAM120C
HOVERGENQ9NX05
HOGENOMQ9NX05
Homologs : HomoloGeneFAM120C
Homology/Alignments : Family Browser (UCSC)FAM120C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM120C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM120C
dbVarFAM120C
ClinVarFAM120C
1000_GenomesFAM120C 
Exome Variant ServerFAM120C
ExAC (Exome Aggregation Consortium)FAM120C (select the gene name)
Genetic variants : HAPMAP54954
Genomic Variants (DGV)FAM120C [DGVbeta]
DECIPHERFAM120C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM120C 
Mutations
ICGC Data PortalFAM120C 
TCGA Data PortalFAM120C 
Broad Tumor PortalFAM120C
OASIS PortalFAM120C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM120C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM120C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FAM120C
DgiDB (Drug Gene Interaction Database)FAM120C
DoCM (Curated mutations)FAM120C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM120C (select a term)
intoGenFAM120C
Cancer3DFAM120C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300741   
Orphanet
MedgenFAM120C
Genetic Testing Registry FAM120C
NextProtQ9NX05 [Medical]
TSGene54954
GENETestsFAM120C
Target ValidationFAM120C
Huge Navigator FAM120C [HugePedia]
snp3D : Map Gene to Disease54954
BioCentury BCIQFAM120C
ClinGenFAM120C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54954
Chemical/Pharm GKB GenePA134932227
Clinical trialFAM120C
Miscellaneous
canSAR (ICR)FAM120C (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM120C
EVEXFAM120C
GoPubMedFAM120C
iHOPFAM120C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:47:46 CEST 2017

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