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FAM122A (family with sequence similarity 122A)

Identity

Alias_namesC9orf42
chromosome 9 open reading frame 42
Alias_symbol (synonym)MGC17347
Other alias
HGNC (Hugo) FAM122A
LocusID (NCBI) 116224
Atlas_Id 63005
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 68780006 and ends at 68783879 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM122A   23490
Cards
Entrez_Gene (NCBI)FAM122A  116224  family with sequence similarity 122A
AliasesC9orf42
GeneCards (Weizmann)FAM122A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:68780006-68783879 [Contig_View]  FAM122A [Vega]
TCGA cBioPortalFAM122A
AceView (NCBI)FAM122A
Genatlas (Paris)FAM122A
WikiGenes116224
SOURCE (Princeton)FAM122A
Genetics Home Reference (NIH)FAM122A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM122A  -     chr9:68780006-68783879 +  9q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM122A  -     9q21.11   [Description]    (hg19-Feb_2009)
EnsemblFAM122A - 9q21.11 [CytoView hg19]  FAM122A - 9q21.11 [CytoView hg38]
Mapping of homologs : NCBIFAM122A [Mapview hg19]  FAM122A [Mapview hg38]
OMIM617249   
Gene and transcription
Genbank (Entrez)AA418448 AK126379 BC013062 BE778779 BF086285
RefSeq transcript (Entrez)NM_138333
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM122A
Cluster EST : UnigeneHs.655572 [ NCBI ]
CGAP (NCI)Hs.655572
Gene ExpressionFAM122A [ NCBI-GEO ]   FAM122A [ EBI - ARRAY_EXPRESS ]   FAM122A [ SEEK ]   FAM122A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM122A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116224
GTEX Portal (Tissue expression)FAM122A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96E09   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96E09  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96E09
Splice isoforms : SwissVarQ96E09
PhosPhoSitePlusQ96E09
Domains : Interpro (EBI)FAM122   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM122A
DMDM Disease mutations116224
Blocks (Seattle)FAM122A
SuperfamilyQ96E09
Peptide AtlasQ96E09
HPRD10074
IPIIPI00061087   IPI01014009   
Protein Interaction databases
DIP (DOE-UCLA)Q96E09
IntAct (EBI)Q96E09
BioGRIDFAM122A
STRING (EMBL)FAM122A
ZODIACFAM122A
Ontologies - Pathways
QuickGOQ96E09
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM122A
Atlas of Cancer Signalling NetworkFAM122A
Wikipedia pathwaysFAM122A
Orthology - Evolution
OrthoDB116224
Phylogenetic Trees/Animal Genes : TreeFamFAM122A
HOVERGENQ96E09
HOGENOMQ96E09
Homologs : HomoloGeneFAM122A
Homology/Alignments : Family Browser (UCSC)FAM122A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM122A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM122A
dbVarFAM122A
ClinVarFAM122A
1000_GenomesFAM122A 
Exome Variant ServerFAM122A
ExAC (Exome Aggregation Consortium)FAM122A (select the gene name)
Genetic variants : HAPMAP116224
Genomic Variants (DGV)FAM122A [DGVbeta]
DECIPHERFAM122A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM122A 
Mutations
ICGC Data PortalFAM122A 
TCGA Data PortalFAM122A 
Broad Tumor PortalFAM122A
OASIS PortalFAM122A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM122A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM122A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM122A
DgiDB (Drug Gene Interaction Database)FAM122A
DoCM (Curated mutations)FAM122A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM122A (select a term)
intoGenFAM122A
Cancer3DFAM122A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617249   
Orphanet
MedgenFAM122A
Genetic Testing Registry FAM122A
NextProtQ96E09 [Medical]
TSGene116224
GENETestsFAM122A
Target ValidationFAM122A
Huge Navigator FAM122A [HugePedia]
snp3D : Map Gene to Disease116224
BioCentury BCIQFAM122A
ClinGenFAM122A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116224
Chemical/Pharm GKB GenePA134861471
Clinical trialFAM122A
Miscellaneous
canSAR (ICR)FAM122A (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM122A
EVEXFAM122A
GoPubMedFAM122A
iHOPFAM122A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:47:46 CEST 2017

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