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FAM122B (family with sequence similarity 122B)

Identity

Alias_symbol (synonym)DKFZp686L20116
RP11-308B5.5
Other aliasSPACIA2
HGNC (Hugo) FAM122B
LocusID (NCBI) 159090
Atlas_Id 63006
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 134769566 and ends at 134796355 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DCAF5 (14q24.1) / FAM122B (Xq26.3)FAM122B (Xq26.3) / GPC4 (Xq26.2)TMEM57 (1p36.11) / FAM122B (Xq26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM122B   30490
Cards
Entrez_Gene (NCBI)FAM122B  159090  family with sequence similarity 122B
AliasesSPACIA2
GeneCards (Weizmann)FAM122B
Ensembl hg19 (Hinxton)ENSG00000156504 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156504 [Gene_View]  chrX:134769566-134796355 [Contig_View]  FAM122B [Vega]
ICGC DataPortalENSG00000156504
TCGA cBioPortalFAM122B
AceView (NCBI)FAM122B
Genatlas (Paris)FAM122B
WikiGenes159090
SOURCE (Princeton)FAM122B
Genetics Home Reference (NIH)FAM122B
Genomic and cartography
GoldenPath hg38 (UCSC)FAM122B  -     chrX:134769566-134796355 -  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM122B  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblFAM122B - Xq26.3 [CytoView hg19]  FAM122B - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBIFAM122B [Mapview hg19]  FAM122B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA976209 AB541014 AB541015 AK026809 AK124650
RefSeq transcript (Entrez)NM_001166599 NM_001166600 NM_001170756 NM_001170757 NM_001331088 NM_001331089 NM_001331090 NM_001331091 NM_001331092 NM_001331093 NM_001331094 NM_145284
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM122B
Cluster EST : UnigeneHs.404706 [ NCBI ]
CGAP (NCI)Hs.404706
Alternative Splicing GalleryENSG00000156504
Gene ExpressionFAM122B [ NCBI-GEO ]   FAM122B [ EBI - ARRAY_EXPRESS ]   FAM122B [ SEEK ]   FAM122B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM122B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)159090
GTEX Portal (Tissue expression)FAM122B
Human Protein AtlasENSG00000156504-FAM122B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z309   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z309  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z309
Splice isoforms : SwissVarQ7Z309
PhosPhoSitePlusQ7Z309
Domains : Interpro (EBI)FAM122   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM122B
DMDM Disease mutations159090
Blocks (Seattle)FAM122B
SuperfamilyQ7Z309
Human Protein Atlas [tissue]ENSG00000156504-FAM122B [tissue]
Peptide AtlasQ7Z309
HPRD06614
IPIIPI00792682   IPI00749302   IPI00152151   IPI00446175   IPI00743542   IPI01014835   IPI00794590   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z309
IntAct (EBI)Q7Z309
FunCoupENSG00000156504
BioGRIDFAM122B
STRING (EMBL)FAM122B
ZODIACFAM122B
Ontologies - Pathways
QuickGOQ7Z309
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM122B
Atlas of Cancer Signalling NetworkFAM122B
Wikipedia pathwaysFAM122B
Orthology - Evolution
OrthoDB159090
GeneTree (enSembl)ENSG00000156504
Phylogenetic Trees/Animal Genes : TreeFamFAM122B
HOVERGENQ7Z309
HOGENOMQ7Z309
Homologs : HomoloGeneFAM122B
Homology/Alignments : Family Browser (UCSC)FAM122B
Gene fusions - Rearrangements
Tumor Fusion PortalFAM122B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM122B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM122B
dbVarFAM122B
ClinVarFAM122B
1000_GenomesFAM122B 
Exome Variant ServerFAM122B
ExAC (Exome Aggregation Consortium)ENSG00000156504
GNOMAD BrowserENSG00000156504
Genetic variants : HAPMAP159090
Genomic Variants (DGV)FAM122B [DGVbeta]
DECIPHERFAM122B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM122B 
Mutations
ICGC Data PortalFAM122B 
TCGA Data PortalFAM122B 
Broad Tumor PortalFAM122B
OASIS PortalFAM122B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM122B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM122B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FAM122B
DgiDB (Drug Gene Interaction Database)FAM122B
DoCM (Curated mutations)FAM122B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM122B (select a term)
intoGenFAM122B
Cancer3DFAM122B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM122B
MedgenFAM122B
Genetic Testing Registry FAM122B
NextProtQ7Z309 [Medical]
TSGene159090
GENETestsFAM122B
Target ValidationFAM122B
Huge Navigator FAM122B [HugePedia]
snp3D : Map Gene to Disease159090
BioCentury BCIQFAM122B
ClinGenFAM122B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD159090
Chemical/Pharm GKB GenePA128394763
Clinical trialFAM122B
Miscellaneous
canSAR (ICR)FAM122B (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM122B
EVEXFAM122B
GoPubMedFAM122B
iHOPFAM122B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:59:29 CET 2017

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