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FAM122C (family with sequence similarity 122C)

Identity

Alias_symbol (synonym)RP3-473B4.1
Other alias-
HGNC (Hugo) FAM122C
LocusID (NCBI) 159091
Atlas_Id 63007
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 134807193 and ends at 134854611 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM122C (Xq26.3) / TFDP1 (13q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM122C   25202
Cards
Entrez_Gene (NCBI)FAM122C  159091  family with sequence similarity 122C
Aliases
GeneCards (Weizmann)FAM122C
Ensembl hg19 (Hinxton)ENSG00000156500 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156500 [Gene_View]  chrX:134807193-134854611 [Contig_View]  FAM122C [Vega]
ICGC DataPortalENSG00000156500
TCGA cBioPortalFAM122C
AceView (NCBI)FAM122C
Genatlas (Paris)FAM122C
WikiGenes159091
SOURCE (Princeton)FAM122C
Genetics Home Reference (NIH)FAM122C
Genomic and cartography
GoldenPath hg38 (UCSC)FAM122C  -     chrX:134807193-134854611 +  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM122C  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblFAM122C - Xq26.3 [CytoView hg19]  FAM122C - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBIFAM122C [Mapview hg19]  FAM122C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF088001 AK090611 AK130840 AK295485 AK307219
RefSeq transcript (Entrez)NM_001170779 NM_001170780 NM_001170781 NM_001170782 NM_001170783 NM_001170784 NM_138819
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM122C
Cluster EST : UnigeneHs.269127 [ NCBI ]
CGAP (NCI)Hs.269127
Alternative Splicing GalleryENSG00000156500
Gene ExpressionFAM122C [ NCBI-GEO ]   FAM122C [ EBI - ARRAY_EXPRESS ]   FAM122C [ SEEK ]   FAM122C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM122C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)159091
GTEX Portal (Tissue expression)FAM122C
Human Protein AtlasENSG00000156500-FAM122C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P4D5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P4D5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P4D5
Splice isoforms : SwissVarQ6P4D5
PhosPhoSitePlusQ6P4D5
Domains : Interpro (EBI)FAM122   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM122C
DMDM Disease mutations159091
Blocks (Seattle)FAM122C
SuperfamilyQ6P4D5
Human Protein Atlas [tissue]ENSG00000156500-FAM122C [tissue]
Peptide AtlasQ6P4D5
HPRD06615
IPIIPI00440684   IPI00154822   IPI00910225   IPI00954974   IPI00902907   IPI00439765   IPI00955056   
Protein Interaction databases
DIP (DOE-UCLA)Q6P4D5
IntAct (EBI)Q6P4D5
FunCoupENSG00000156500
BioGRIDFAM122C
STRING (EMBL)FAM122C
ZODIACFAM122C
Ontologies - Pathways
QuickGOQ6P4D5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM122C
Atlas of Cancer Signalling NetworkFAM122C
Wikipedia pathwaysFAM122C
Orthology - Evolution
OrthoDB159091
GeneTree (enSembl)ENSG00000156500
Phylogenetic Trees/Animal Genes : TreeFamFAM122C
HOVERGENQ6P4D5
HOGENOMQ6P4D5
Homologs : HomoloGeneFAM122C
Homology/Alignments : Family Browser (UCSC)FAM122C
Gene fusions - Rearrangements
Tumor Fusion PortalFAM122C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM122C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM122C
dbVarFAM122C
ClinVarFAM122C
1000_GenomesFAM122C 
Exome Variant ServerFAM122C
ExAC (Exome Aggregation Consortium)ENSG00000156500
GNOMAD BrowserENSG00000156500
Genetic variants : HAPMAP159091
Genomic Variants (DGV)FAM122C [DGVbeta]
DECIPHERFAM122C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM122C 
Mutations
ICGC Data PortalFAM122C 
TCGA Data PortalFAM122C 
Broad Tumor PortalFAM122C
OASIS PortalFAM122C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM122C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM122C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FAM122C
DgiDB (Drug Gene Interaction Database)FAM122C
DoCM (Curated mutations)FAM122C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM122C (select a term)
intoGenFAM122C
Cancer3DFAM122C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM122C
MedgenFAM122C
Genetic Testing Registry FAM122C
NextProtQ6P4D5 [Medical]
TSGene159091
GENETestsFAM122C
Target ValidationFAM122C
Huge Navigator FAM122C [HugePedia]
snp3D : Map Gene to Disease159091
BioCentury BCIQFAM122C
ClinGenFAM122C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD159091
Chemical/Pharm GKB GenePA145148896
Clinical trialFAM122C
Miscellaneous
canSAR (ICR)FAM122C (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM122C
EVEXFAM122C
GoPubMedFAM122C
iHOPFAM122C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:28:21 CET 2017

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