Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM124A (family with sequence similarity 124 member A)

Identity

Alias_namesfamily with sequence similarity 124A
Alias_symbol (synonym)FLJ30707
Other alias-
HGNC (Hugo) FAM124A
LocusID (NCBI) 220108
Atlas_Id 63008
Location 13q14.3  [Link to chromosome band 13q14]
Location_base_pair Starts at 51222334 and ends at 51284241 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM124A   26413
Cards
Entrez_Gene (NCBI)FAM124A  220108  family with sequence similarity 124 member A
Aliases
GeneCards (Weizmann)FAM124A
Ensembl hg19 (Hinxton)ENSG00000150510 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150510 [Gene_View]  chr13:51222334-51284241 [Contig_View]  FAM124A [Vega]
ICGC DataPortalENSG00000150510
TCGA cBioPortalFAM124A
AceView (NCBI)FAM124A
Genatlas (Paris)FAM124A
WikiGenes220108
SOURCE (Princeton)FAM124A
Genetics Home Reference (NIH)FAM124A
Genomic and cartography
GoldenPath hg38 (UCSC)FAM124A  -     chr13:51222334-51284241 +  13q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM124A  -     13q14.3   [Description]    (hg19-Feb_2009)
EnsemblFAM124A - 13q14.3 [CytoView hg19]  FAM124A - 13q14.3 [CytoView hg38]
Mapping of homologs : NCBIFAM124A [Mapview hg19]  FAM124A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055269 AK056643 AK096364 AY358177 BC034497
RefSeq transcript (Entrez)NM_001242312 NM_001330522 NM_145019
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM124A
Cluster EST : UnigeneHs.737490 [ NCBI ]
CGAP (NCI)Hs.737490
Alternative Splicing GalleryENSG00000150510
Gene ExpressionFAM124A [ NCBI-GEO ]   FAM124A [ EBI - ARRAY_EXPRESS ]   FAM124A [ SEEK ]   FAM124A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM124A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220108
GTEX Portal (Tissue expression)FAM124A
Human Protein AtlasENSG00000150510-FAM124A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86V42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86V42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86V42
Splice isoforms : SwissVarQ86V42
PhosPhoSitePlusQ86V42
Domains : Interpro (EBI)FAM124   
Domain families : Pfam (Sanger)FAM124 (PF15067)   
Domain families : Pfam (NCBI)pfam15067   
Conserved Domain (NCBI)FAM124A
DMDM Disease mutations220108
Blocks (Seattle)FAM124A
SuperfamilyQ86V42
Human Protein Atlas [tissue]ENSG00000150510-FAM124A [tissue]
Peptide AtlasQ86V42
HPRD08704
IPIIPI00328801   IPI00298264   IPI00845420   IPI00432755   
Protein Interaction databases
DIP (DOE-UCLA)Q86V42
IntAct (EBI)Q86V42
FunCoupENSG00000150510
BioGRIDFAM124A
STRING (EMBL)FAM124A
ZODIACFAM124A
Ontologies - Pathways
QuickGOQ86V42
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM124A
Atlas of Cancer Signalling NetworkFAM124A
Wikipedia pathwaysFAM124A
Orthology - Evolution
OrthoDB220108
GeneTree (enSembl)ENSG00000150510
Phylogenetic Trees/Animal Genes : TreeFamFAM124A
HOVERGENQ86V42
HOGENOMQ86V42
Homologs : HomoloGeneFAM124A
Homology/Alignments : Family Browser (UCSC)FAM124A
Gene fusions - Rearrangements
Tumor Fusion PortalFAM124A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM124A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM124A
dbVarFAM124A
ClinVarFAM124A
1000_GenomesFAM124A 
Exome Variant ServerFAM124A
ExAC (Exome Aggregation Consortium)ENSG00000150510
GNOMAD BrowserENSG00000150510
Genetic variants : HAPMAP220108
Genomic Variants (DGV)FAM124A [DGVbeta]
DECIPHERFAM124A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM124A 
Mutations
ICGC Data PortalFAM124A 
TCGA Data PortalFAM124A 
Broad Tumor PortalFAM124A
OASIS PortalFAM124A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM124A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM124A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM124A
DgiDB (Drug Gene Interaction Database)FAM124A
DoCM (Curated mutations)FAM124A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM124A (select a term)
intoGenFAM124A
Cancer3DFAM124A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM124A
MedgenFAM124A
Genetic Testing Registry FAM124A
NextProtQ86V42 [Medical]
TSGene220108
GENETestsFAM124A
Target ValidationFAM124A
Huge Navigator FAM124A [HugePedia]
snp3D : Map Gene to Disease220108
BioCentury BCIQFAM124A
ClinGenFAM124A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220108
Chemical/Pharm GKB GenePA162385800
Clinical trialFAM124A
Miscellaneous
canSAR (ICR)FAM124A (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM124A
EVEXFAM124A
GoPubMedFAM124A
iHOPFAM124A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:27:58 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.