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FAM127B (family with sequence similarity 127, member B)

Identity

Alias_namesfamily with sequence similarity 127, member B
Alias_symbol (synonym)DKFZP564B147
MAR8A
CXX1b
Other alias
HGNC (Hugo) FAM127B
LocusID (NCBI) 26071
Atlas_Id 63013
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 134184963 and ends at 134186221 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PTPRD (9p24.1) / FAM127B (Xq26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM127B   24514
Cards
Entrez_Gene (NCBI)FAM127B  26071  family with sequence similarity 127, member B
AliasesCXX1b; MAR8A
GeneCards (Weizmann)FAM127B
Ensembl hg19 (Hinxton)ENSG00000203950 [Gene_View]  chrX:134184963-134186221 [Contig_View]  FAM127B [Vega]
Ensembl hg38 (Hinxton)ENSG00000203950 [Gene_View]  chrX:134184963-134186221 [Contig_View]  FAM127B [Vega]
ICGC DataPortalENSG00000203950
TCGA cBioPortalFAM127B
AceView (NCBI)FAM127B
Genatlas (Paris)FAM127B
WikiGenes26071
SOURCE (Princeton)FAM127B
Genetics Home Reference (NIH)FAM127B
Genomic and cartography
GoldenPath hg19 (UCSC)FAM127B  -     chrX:134184963-134186221 -  Xq26.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM127B  -     Xq26.3   [Description]    (hg38-Dec_2013)
EnsemblFAM127B - Xq26.3 [CytoView hg19]  FAM127B - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBIFAM127B [Mapview hg19]  FAM127B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL117556 BC000393 BC008096 BC019300 BC071991
RefSeq transcript (Entrez)NM_001078172 NM_001134321 NM_015582
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)FAM127B
Cluster EST : UnigeneHs.460924 [ NCBI ]
CGAP (NCI)Hs.460924
Alternative Splicing GalleryENSG00000203950
Gene ExpressionFAM127B [ NCBI-GEO ]   FAM127B [ EBI - ARRAY_EXPRESS ]   FAM127B [ SEEK ]   FAM127B [ MEM ]
Gene Expression Viewer (FireBrowse)FAM127B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26071
GTEX Portal (Tissue expression)FAM127B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWD3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWD3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWD3
Splice isoforms : SwissVarQ9BWD3
PhosPhoSitePlusQ9BWD3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM127B
DMDM Disease mutations26071
Blocks (Seattle)FAM127B
SuperfamilyQ9BWD3
Human Protein AtlasENSG00000203950
Peptide AtlasQ9BWD3
HPRD06485
IPIIPI00852644   IPI00174818   IPI00884404   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWD3
IntAct (EBI)Q9BWD3
FunCoupENSG00000203950
BioGRIDFAM127B
STRING (EMBL)FAM127B
ZODIACFAM127B
Ontologies - Pathways
QuickGOQ9BWD3
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM127B
Atlas of Cancer Signalling NetworkFAM127B
Wikipedia pathwaysFAM127B
Orthology - Evolution
OrthoDB26071
GeneTree (enSembl)ENSG00000203950
Phylogenetic Trees/Animal Genes : TreeFamFAM127B
HOVERGENQ9BWD3
HOGENOMQ9BWD3
Homologs : HomoloGeneFAM127B
Homology/Alignments : Family Browser (UCSC)FAM127B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM127B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM127B
dbVarFAM127B
ClinVarFAM127B
1000_GenomesFAM127B 
Exome Variant ServerFAM127B
ExAC (Exome Aggregation Consortium)FAM127B (select the gene name)
Genetic variants : HAPMAP26071
Genomic Variants (DGV)FAM127B [DGVbeta]
DECIPHER (Syndromes)X:134184963-134186221  ENSG00000203950
CONAN: Copy Number AnalysisFAM127B 
Mutations
ICGC Data PortalFAM127B 
TCGA Data PortalFAM127B 
Broad Tumor PortalFAM127B
OASIS PortalFAM127B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM127B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM127B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM127B
DgiDB (Drug Gene Interaction Database)FAM127B
DoCM (Curated mutations)FAM127B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM127B (select a term)
intoGenFAM127B
Cancer3DFAM127B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM127B
Genetic Testing Registry FAM127B
NextProtQ9BWD3 [Medical]
TSGene26071
GENETestsFAM127B
Huge Navigator FAM127B [HugePedia]
snp3D : Map Gene to Disease26071
BioCentury BCIQFAM127B
ClinGenFAM127B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26071
Chemical/Pharm GKB GenePA162385915
Clinical trialFAM127B
Miscellaneous
canSAR (ICR)FAM127B (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM127B
EVEXFAM127B
GoPubMedFAM127B
iHOPFAM127B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:29 CET 2017

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