Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FAM127C (family with sequence similarity 127, member C)

Identity

Alias_namesfamily with sequence similarity 127, member C
Alias_symbol (synonym)MAR8B
CXX1c
Other alias
HGNC (Hugo) FAM127C
LocusID (NCBI) 441518
Atlas_Id 63014
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 134154534 and ends at 134156566 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM127C   33156
Cards
Entrez_Gene (NCBI)FAM127C  441518  family with sequence similarity 127, member C
AliasesCXX1c; MAR8B
GeneCards (Weizmann)FAM127C
Ensembl hg19 (Hinxton)ENSG00000212747 [Gene_View]  chrX:134154534-134156566 [Contig_View]  FAM127C [Vega]
Ensembl hg38 (Hinxton)ENSG00000212747 [Gene_View]  chrX:134154534-134156566 [Contig_View]  FAM127C [Vega]
ICGC DataPortalENSG00000212747
TCGA cBioPortalFAM127C
AceView (NCBI)FAM127C
Genatlas (Paris)FAM127C
WikiGenes441518
SOURCE (Princeton)FAM127C
Genetics Home Reference (NIH)FAM127C
Genomic and cartography
GoldenPath hg19 (UCSC)FAM127C  -     chrX:134154534-134156566 -  Xq26.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM127C  -     Xq26.3   [Description]    (hg38-Dec_2013)
EnsemblFAM127C - Xq26.3 [CytoView hg19]  FAM127C - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBIFAM127C [Mapview hg19]  FAM127C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI569106 AK098443 BC048268 BC063496 BC073159
RefSeq transcript (Entrez)NM_001078173
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)FAM127C
Cluster EST : UnigeneHs.378813 [ NCBI ]
CGAP (NCI)Hs.378813
Alternative Splicing GalleryENSG00000212747
Gene ExpressionFAM127C [ NCBI-GEO ]   FAM127C [ EBI - ARRAY_EXPRESS ]   FAM127C [ SEEK ]   FAM127C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM127C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441518
GTEX Portal (Tissue expression)FAM127C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RB0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RB0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RB0
Splice isoforms : SwissVarQ17RB0
PhosPhoSitePlusQ17RB0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM127C
DMDM Disease mutations441518
Blocks (Seattle)FAM127C
SuperfamilyQ17RB0
Human Protein AtlasENSG00000212747
Peptide AtlasQ17RB0
IPIIPI00719804   IPI01011778   
Protein Interaction databases
DIP (DOE-UCLA)Q17RB0
IntAct (EBI)Q17RB0
FunCoupENSG00000212747
BioGRIDFAM127C
STRING (EMBL)FAM127C
ZODIACFAM127C
Ontologies - Pathways
QuickGOQ17RB0
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFAM127C
Atlas of Cancer Signalling NetworkFAM127C
Wikipedia pathwaysFAM127C
Orthology - Evolution
OrthoDB441518
GeneTree (enSembl)ENSG00000212747
Phylogenetic Trees/Animal Genes : TreeFamFAM127C
HOVERGENQ17RB0
HOGENOMQ17RB0
Homologs : HomoloGeneFAM127C
Homology/Alignments : Family Browser (UCSC)FAM127C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM127C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM127C
dbVarFAM127C
ClinVarFAM127C
1000_GenomesFAM127C 
Exome Variant ServerFAM127C
ExAC (Exome Aggregation Consortium)FAM127C (select the gene name)
Genetic variants : HAPMAP441518
Genomic Variants (DGV)FAM127C [DGVbeta]
DECIPHER (Syndromes)X:134154534-134156566  ENSG00000212747
CONAN: Copy Number AnalysisFAM127C 
Mutations
ICGC Data PortalFAM127C 
TCGA Data PortalFAM127C 
Broad Tumor PortalFAM127C
OASIS PortalFAM127C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM127C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM127C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM127C
DgiDB (Drug Gene Interaction Database)FAM127C
DoCM (Curated mutations)FAM127C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM127C (select a term)
intoGenFAM127C
Cancer3DFAM127C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM127C
Genetic Testing Registry FAM127C
NextProtQ17RB0 [Medical]
TSGene441518
GENETestsFAM127C
Huge Navigator FAM127C [HugePedia]
snp3D : Map Gene to Disease441518
BioCentury BCIQFAM127C
ClinGenFAM127C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441518
Chemical/Pharm GKB GenePA162385922
Clinical trialFAM127C
Miscellaneous
canSAR (ICR)FAM127C (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM127C
EVEXFAM127C
GoPubMedFAM127C
iHOPFAM127C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:03:29 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.