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FAM129A (family with sequence similarity 129 member A)

Identity

Alias_namesC1orf24
chromosome 1 open reading frame 24
family with sequence similarity 129, member A
Alias_symbol (synonym)NIBAN
GIG39
Other alias
HGNC (Hugo) FAM129A
LocusID (NCBI) 116496
Atlas_Id 871
Location 1q25.3  [Link to chromosome band 1q25]
Location_base_pair Starts at 184760159 and ends at 184943718 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANO6 (12q12) / FAM129A (1q25.3)FAM129A (1q25.3) / CXCL16 (17p13.2)FAM129A (1q25.3) / FAM129A (1q25.3)
NOC4L (12q24.33) / FAM129A (1q25.3)YIPF3 (6p21.1) / FAM129A (1q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM129A   16784
Cards
Entrez_Gene (NCBI)FAM129A  116496  family with sequence similarity 129 member A
AliasesC1orf24; GIG39; NIBAN
GeneCards (Weizmann)FAM129A
Ensembl hg19 (Hinxton)ENSG00000135842 [Gene_View]  chr1:184760159-184943718 [Contig_View]  FAM129A [Vega]
Ensembl hg38 (Hinxton)ENSG00000135842 [Gene_View]  chr1:184760159-184943718 [Contig_View]  FAM129A [Vega]
ICGC DataPortalENSG00000135842
TCGA cBioPortalFAM129A
AceView (NCBI)FAM129A
Genatlas (Paris)FAM129A
WikiGenes116496
SOURCE (Princeton)FAM129A
Genetics Home Reference (NIH)FAM129A
Genomic and cartography
GoldenPath hg19 (UCSC)FAM129A  -     chr1:184760159-184943718 -  1q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM129A  -     1q25.3   [Description]    (hg38-Dec_2013)
EnsemblFAM129A - 1q25.3 [CytoView hg19]  FAM129A - 1q25.3 [CytoView hg38]
Mapping of homologs : NCBIFAM129A [Mapview hg19]  FAM129A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB050477 AF288391 AK022527 AK074139 AK095547
RefSeq transcript (Entrez)NM_052966
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)FAM129A
Cluster EST : UnigeneHs.518662 [ NCBI ]
CGAP (NCI)Hs.518662
Alternative Splicing GalleryENSG00000135842
Gene ExpressionFAM129A [ NCBI-GEO ]   FAM129A [ EBI - ARRAY_EXPRESS ]   FAM129A [ SEEK ]   FAM129A [ MEM ]
Gene Expression Viewer (FireBrowse)FAM129A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116496
GTEX Portal (Tissue expression)FAM129A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZQ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZQ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZQ8
Splice isoforms : SwissVarQ9BZQ8
PhosPhoSitePlusQ9BZQ8
Domains : Interpro (EBI)Niban-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FAM129A
DMDM Disease mutations116496
Blocks (Seattle)FAM129A
SuperfamilyQ9BZQ8
Human Protein AtlasENSG00000135842
Peptide AtlasQ9BZQ8
HPRD10725
IPIIPI00328350   IPI00647836   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZQ8
IntAct (EBI)Q9BZQ8
FunCoupENSG00000135842
BioGRIDFAM129A
STRING (EMBL)FAM129A
ZODIACFAM129A
Ontologies - Pathways
QuickGOQ9BZQ8
Ontology : AmiGOnegative regulation of protein phosphorylation  positive regulation of protein phosphorylation  molecular_function  protein binding  cytoplasm  plasma membrane  membrane  response to endoplasmic reticulum stress  positive regulation of translation  extracellular exosome  
Ontology : EGO-EBInegative regulation of protein phosphorylation  positive regulation of protein phosphorylation  molecular_function  protein binding  cytoplasm  plasma membrane  membrane  response to endoplasmic reticulum stress  positive regulation of translation  extracellular exosome  
NDEx NetworkFAM129A
Atlas of Cancer Signalling NetworkFAM129A
Wikipedia pathwaysFAM129A
Orthology - Evolution
OrthoDB116496
GeneTree (enSembl)ENSG00000135842
Phylogenetic Trees/Animal Genes : TreeFamFAM129A
HOVERGENQ9BZQ8
HOGENOMQ9BZQ8
Homologs : HomoloGeneFAM129A
Homology/Alignments : Family Browser (UCSC)FAM129A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM129A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM129A
dbVarFAM129A
ClinVarFAM129A
1000_GenomesFAM129A 
Exome Variant ServerFAM129A
ExAC (Exome Aggregation Consortium)FAM129A (select the gene name)
Genetic variants : HAPMAP116496
Genomic Variants (DGV)FAM129A [DGVbeta]
DECIPHER (Syndromes)1:184760159-184943718  ENSG00000135842
CONAN: Copy Number AnalysisFAM129A 
Mutations
ICGC Data PortalFAM129A 
TCGA Data PortalFAM129A 
Broad Tumor PortalFAM129A
OASIS PortalFAM129A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM129A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM129A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM129A
DgiDB (Drug Gene Interaction Database)FAM129A
DoCM (Curated mutations)FAM129A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM129A (select a term)
intoGenFAM129A
Cancer3DFAM129A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFAM129A
Genetic Testing Registry FAM129A
NextProtQ9BZQ8 [Medical]
TSGene116496
GENETestsFAM129A
Huge Navigator FAM129A [HugePedia]
snp3D : Map Gene to Disease116496
BioCentury BCIQFAM129A
ClinGenFAM129A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116496
Chemical/Pharm GKB GenePA162385951
Clinical trialFAM129A
Miscellaneous
canSAR (ICR)FAM129A (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM129A
EVEXFAM129A
GoPubMedFAM129A
iHOPFAM129A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:05:21 CET 2017

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