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FAM129C (family with sequence similarity 129, member C)

Identity

Alias_namesfamily with sequence similarity 129, member C
Alias_symbol (synonym)FLJ39802
BCNP1
Other alias
HGNC (Hugo) FAM129C
LocusID (NCBI) 199786
Atlas_Id 63015
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 17634110 and ends at 17662835 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CLTC (17q23.1) / FAM129C (19p13.11)FAM129C (19p13.11) / COLGALT1 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FAM129C   24130
Cards
Entrez_Gene (NCBI)FAM129C  199786  family with sequence similarity 129, member C
AliasesBCNP1
GeneCards (Weizmann)FAM129C
Ensembl hg19 (Hinxton)ENSG00000167483 [Gene_View]  chr19:17634110-17662835 [Contig_View]  FAM129C [Vega]
Ensembl hg38 (Hinxton)ENSG00000167483 [Gene_View]  chr19:17634110-17662835 [Contig_View]  FAM129C [Vega]
ICGC DataPortalENSG00000167483
TCGA cBioPortalFAM129C
AceView (NCBI)FAM129C
Genatlas (Paris)FAM129C
WikiGenes199786
SOURCE (Princeton)FAM129C
Genetics Home Reference (NIH)FAM129C
Genomic and cartography
GoldenPath hg19 (UCSC)FAM129C  -     chr19:17634110-17662835 +  19p13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FAM129C  -     19p13.11   [Description]    (hg38-Dec_2013)
EnsemblFAM129C - 19p13.11 [CytoView hg19]  FAM129C - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIFAM129C [Mapview hg19]  FAM129C [Mapview hg38]
OMIM609967   
Gene and transcription
Genbank (Entrez)AA649002 AI688885 AK074069 AK097121 AK298062
RefSeq transcript (Entrez)NM_001098524 NM_173544
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)FAM129C
Cluster EST : UnigeneHs.434133 [ NCBI ]
CGAP (NCI)Hs.434133
Alternative Splicing GalleryENSG00000167483
Gene ExpressionFAM129C [ NCBI-GEO ]   FAM129C [ EBI - ARRAY_EXPRESS ]   FAM129C [ SEEK ]   FAM129C [ MEM ]
Gene Expression Viewer (FireBrowse)FAM129C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)199786
GTEX Portal (Tissue expression)FAM129C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XR2
Splice isoforms : SwissVarQ86XR2
PhosPhoSitePlusQ86XR2
Domains : Interpro (EBI)Niban_like    PH_domain    PH_like_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PH (SM00233)  
Conserved Domain (NCBI)FAM129C
DMDM Disease mutations199786
Blocks (Seattle)FAM129C
SuperfamilyQ86XR2
Human Protein AtlasENSG00000167483
Peptide AtlasQ86XR2
HPRD16546
IPIIPI00329276   IPI00384585   IPI00384584   IPI00385414   IPI00332604   IPI01014947   IPI00910218   IPI00953399   
Protein Interaction databases
DIP (DOE-UCLA)Q86XR2
IntAct (EBI)Q86XR2
FunCoupENSG00000167483
BioGRIDFAM129C
STRING (EMBL)FAM129C
ZODIACFAM129C
Ontologies - Pathways
QuickGOQ86XR2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM129C
Atlas of Cancer Signalling NetworkFAM129C
Wikipedia pathwaysFAM129C
Orthology - Evolution
OrthoDB199786
GeneTree (enSembl)ENSG00000167483
Phylogenetic Trees/Animal Genes : TreeFamFAM129C
HOVERGENQ86XR2
HOGENOMQ86XR2
Homologs : HomoloGeneFAM129C
Homology/Alignments : Family Browser (UCSC)FAM129C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM129C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FAM129C
dbVarFAM129C
ClinVarFAM129C
1000_GenomesFAM129C 
Exome Variant ServerFAM129C
ExAC (Exome Aggregation Consortium)FAM129C (select the gene name)
Genetic variants : HAPMAP199786
Genomic Variants (DGV)FAM129C [DGVbeta]
DECIPHER (Syndromes)19:17634110-17662835  ENSG00000167483
CONAN: Copy Number AnalysisFAM129C 
Mutations
ICGC Data PortalFAM129C 
TCGA Data PortalFAM129C 
Broad Tumor PortalFAM129C
OASIS PortalFAM129C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM129C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM129C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM129C
DgiDB (Drug Gene Interaction Database)FAM129C
DoCM (Curated mutations)FAM129C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM129C (select a term)
intoGenFAM129C
Cancer3DFAM129C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609967   
Orphanet
MedgenFAM129C
Genetic Testing Registry FAM129C
NextProtQ86XR2 [Medical]
TSGene199786
GENETestsFAM129C
Huge Navigator FAM129C [HugePedia]
snp3D : Map Gene to Disease199786
BioCentury BCIQFAM129C
ClinGenFAM129C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD199786
Chemical/Pharm GKB GenePA162386017
Clinical trialFAM129C
Miscellaneous
canSAR (ICR)FAM129C (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM129C
EVEXFAM129C
GoPubMedFAM129C
iHOPFAM129C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:29 CET 2017

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